|
|
What's new in GrainGenes? -- 1994
12 December 1994
4. Search the GrainGenes database
Chromosome 1A and
1A^m^ maps, from Jorge Dubcovsky and Jan Dvorak
Try searching for "dvorak".
RFLP band sizes for 60 BCD and CDO
probes mapped in the Synthetic W7984
x Opata85 population, from Mark Sorrells
Search for "altar84" to see Polymorphism and Image records,
"(altar84
or opata) and mapped" to see the band size mapped for each
Locus.
5. Images from the GrainGenes database
Autoradiograms for the BCD,
CDO vs Synthetic/Opata85 polymorphisms,
from Mark Sorrells. File names are
"SO_.gif".
10. Search the wheat gene catalogue
Updated to the 1993 version. From RA McIntosh, GE Hart and MD Gale
11. Annual Wheat Newsletter
Volume
40, 1994, from Jim Quick
15. Search barley genetic stocks, from Jerry Franckowiak
In progress. Search for "barley" to see all 14 records thus
far.
16. Grains files to browse
"Trit
icum monococcum *", from Jorge Dubcovsky and Jan Dvorak
Tabular versions of the 1A and 1A^m^ maps mentioned
above.
20. Other plant genome information
"Agricultural Genome WWW server", from the National
Agricultural Library
Alternative to Mosaic for those with dial-up, vt100
Internet connections
"GRIN WWW server", from the National Genetic Resources
Program (NGRP)
Direct access to the GRIN database! Pick the link
"Accessions".
--
9 November 1994
4. Search the GrainGenes database
150 new or
extended end-sequences of ABC, ABG, CDO, WG etc. clones,
from Tom Blake
Fifteen wheat
microsatellites, from Marion Roeder
Search for "wms*".
8. Wheat quality evaluations
Hard red spring wheat regional data, 1992-1993, from Gary
Hareland
Grain, flour and loaf characteristics
Compendium of wheat lines carrying chromosome arm
1RS, from Bob Graybosch
Updated to 300 entries
--
28 October 1994
4. Search the GrainGenes database
Wheat group 1 map, Synthetic W7984
x Opata85, from Allen Van Deynze
Search for "map and sorrells".
7. Wheat performance evaluations
HWW Regional Performance Nursery Program,
from Jim Peterson
New, in progress!
14. Grains files to browse
"Wheat W7984 x Opata85 group 1
map", from Allen Van Deynze
Same map as above, in tabular form.
"Triticeae group 1 consensus map",
from Allen Van Deynze
See also images Van*.gif in the Images menu.
--
29 September 1994
4. Search the GrainGenes database
HMW
glutenin subunits and alleles of 1900 cultivars, from Bob Graybosch
Try searching for "subunit".
150 PCR primer pairs for
previously published probes, from Luther
Talbert and Tom Blake.
KSUs, ABCs, ABGs and more. Search for "pcr".
25 more BROWS (Barley, Rice, ...) probe
surveys, from Mark Sorrells
Band sizes and images of blots of RZ, MWG and other
probes. E.g. MWG52.
7. Wheat performance evaluations
State Performance Tests
Arkansas, from Robert Bacon
New!
Illinois 1994 update, from Emerson Nafziger
Mississippi, from David Kilbern
New!
Enhanced WWW service:
Software upgrade for GrainGenes's World Wide Web version,
(URL
http://probe.nalusda.gov:
8000, menu "WWW Interface to ACEDB Databases" /
"query ... GrainGenes"). Now allows searching with the full
power of the
ACEDB query engine.
--
26 August 1994
Some things have moved!
"Grains files to download" / "Wheat Variety Tests", and
"Grains files to download" / "Great Plains Winter Wheat Characteristics"
are now located in the new top-level menu,
"Wheat performance evaluations",
and the former's name has been changed from "Wheat Variety Tests" to "State
Performance Tests".
"NABGMP Steptoe X Morex dataset"
is now
"Grains files
to browse" / "Barley Steptoe x Morex NABGMP QTL dataset".
Our apologies to those users who were accustomed to the old
menu structure
and now must learn a new one; and also to those who were confused
or
inconvenienced by the old one, which was indeed confusing and
inconvenient.
There's still considerable room for improvement, and your
suggestions are
solicited. We're trying to maintain a balance between stability
on the one
hand, and adaptation to accommodate the new kinds of data being
added on the
other.
--
15 August 1994
3. How to
access GrainGenes
Update: E-mail searching and the Plant Genome Database
CD-ROM.
4. Search the GrainGenes database
Barley maps, four
of 2H and one of 3H, from David Laurie
RFLPs relative to li, denso, Ppd-H1 and 5S rDNA.
14. Grains files to browse
"Barley 2H and
3H maps from David Laurie"
Browseable versions of the same maps.
"Stripe rust in
North America, 1968-87", from Rollie Line
USDA Technical Bulletin 1788, with color plates.
15. Grains files to download
Wheat variety tests
Missouri 1994, from Ken Kephart
--
18 July 1994
14. Grains files to browse
Reserved Laboratory Designators for DNA
Clones..., from Gary Hart
Second edition. New designators gbx and sun.
15. Grains files to download
Great Plains Winter Wheat Characteristics, from
Scott Haley and Jim Quick
Drought stress tolerance traits evaluated at Ft.
Collins in 1986-1987.
--
17 June 1994
4. Search the GrainGenes database
Rice O. sativa x O.
longistaminata map, from Susan McCouch via RiceGenes
Many BCD, CDO and RZ markers to compare with other
GrainGenes maps.
450 germplasm
records from Ron DePauw
For entries in the Canadian Western Red Spring Wheat
Trials.
--
2 June 1994
4. Search the GrainGenes database
Triticum tauschii
map, from Rudi Appels
New!
Maize T232 x CM37 map,
from Steve Tanksley
Many BCD, CDO and RZ markers to compare with other
GrainGenes maps.
50 more BROWS and BROWSSM probe
surveys, from Mark Sorrells
Band sizes and images of blots of BCD, CDO and RZ
probes against barley,
rice, oat, wheat, sugarcane, and in some cases sorghum and
maize.
7. Wheat quality evaluations
Idaho quality data, from Ed Souza and Mark Kruk
Multiyear trials of soft white and hard red spring
wheats.
14. Grains files to browse
More Cereal Rust Bulletins, from Mark Hughes
This part of the Gopher is now being maintained current
by Mark directly.
--
18 May 1994
14. Grains files to browse
Barley Harrington x TR306
map, from Andy Kleinhofs
New!
Barley Steptoe x Morex map,
from Andy Kleinhofs
Updated to the Jan 1994 version.
7. Wheat quality evaluations
Regi
onal quality data, 1971-1992, from Bob Graybosch
Summaries from three US Great Plains nurseries.
14. Grains files to browse
Cereal Rust
Bulletin 16 May 1994, from Mark Hughes
Nomenclature of Biochemical and Molecular Loci in Wheat,
from Gary Hart
Official version.
Reserved Laboratory Designators for DNA
Clones..., from Gary Hart
First edition!
15. Grains files to download
Wheat variety tests
Illinois, from Emerson Nafziger
Nebraska, from Len Nelson via
the IANRVM Gopher server at U. Nebraska
16. Software for genetics
GRE
GOR version 1.4.0 and KIN version 1.0.2, from Nick Tinker
--
27 Apr 1994
7. Wheat quality evaluations
Hard winter wheat regional quality reports,
from Bob Graybosch
Analyses from the Northern, Southern, and Western Plains
Regional,
and the Kansas Intrastate Nurseries.
HMW glutenin subunit composition
update, from Bob Graybosch
Wheat lines carrying rye chromosome arm 1RS, from
Bob Graybosch
--
19 Apr 1994
4. Search the GrainGenes database
Barley Igri x Franka
map, from Pathology data updated by Ken Kephart
Additional pathogen species, some symptom descriptions.
11. Annual Wheat Newsletter
Volume
38, 1992, from Jim Quick
14. Grains files to browse
"Barley IGRI x FRANKA map",
from Andreas Graner
Updated to the 377-marker version of January 1994.
15. Gra
ins files to download
"Wheat variety tests", from Ken Kephart and David Van Sanford
Results of state wheat variety trials, in various
spreadsheet and
word processing file formats for use with DOS or
Macintosh software.
---
19 Mar 1994
3. How to access GrainGenes, from Dave Matthews
Access
methods using Gopher, WWW, or ACEDB. There is now a
backup of
this Gopher server, to maintain service in the event of
hardware
glitches like last night's.
4. Search the GrainGenes database
More wheat chromosome-arm
marker data, from Mike Gale
Locations of homologies to 50 PSR probes, including sizes
of the
mapped restriction fragments and polymorphism scores for
the probes
in wheat and barley. Search for "psr102", e.g.
5. Images from the GrainGenes database
120 images of Triticum species, from
Kimber and Feldman's "Wild Wheat"
7. Wheat quality evaluations
HMW glutenin subunit composition, from Bob Graybosch
Update: data for an additional 300 wheat cultivars.
18. Software for genetics
Map Manager, version 2.6,
from Ken Manly
---
3 Mar 1994
3. Search the GrainGenes database
Primer sequences for 65
probes, from Tom Blake and Andy Kleinhofs
Search for "primers".
18. Grains files to browse
"Barley Harrington x
TR306 mapping data", from Andy Kleinhofs
Segregation data for 190 markers.
"Barley Steptoe x Morex
mapping data"
"Barley Steptoe x Morex
markers", from Andy Kleinhofs
Updates of the old 295-marker datasets to 437 markers.
[10. Search CIMMYT cultivar abbreviations]
This item has been removed from the menu, as the data are
now
incorporated into item 3, the GrainGenes database.
--
24 Feb 1994
3. Search the GrainGenes database
Wheat chromosome arm
map, from Mark Sorrells
Chromosome and chromosome-arm locations of homologies to
210 BCD, CDO,
and WG probes, with the sizes of the 800 mapped restriction
fragments.
Try searching for "arm".
8. NABGMP Steptoe X Morex dataset
Barley
quantitative trait mapping dataset, from Pat Hayes
8 traits x 16 environments x 150 doubled haploids, with
QTL analysis.
--
15 Feb 1994
3. Search the GrainGenes database
120 species of
Triticeae and Avena, and all their synonyms, from Ken
Kephart and Gordon Kimber
All 1100 references from the 1993 Catalogue
of Gene Symbols for Wheat,
from Susan Altenbach
Germpla
sm records for the 500 wheat cultivars that have been evaluated
in the 1st through 27th CIMMYT International Spring Wheat
Yield
Nurseries, from Bent Skovmand
--
7 Feb 1994
4. Images from the GrainGenes database
450 new pathology-related
images, from Ken Kephart
Because of the size of this menu the Gopher now has to
think a while
about how to to display it, so be patient.
17. Grains files to browse
"Barley IGRI x FRANKA
mapping data", from "Catalogue of Gene Symbols for
Wheat", from Gary Hart
Barley map, Proctor x
Nudinka, from Mark Sorrells
CIMMYT list of wheat cultivar
abbreviations, from Bent Skovmand
Trait evaluation data, CIMMYT's
24th International Spring Wheat Yield
Nursery, from Paul Fox
Pathologies
(diseases, insects, abiotic injuries) of wheat, barley and
oats, from Ken Kephart
Address information for additional colleagues, from the Oat
Newsletter
mailing list
4. Images from the GrainGenes database
Autora
diograms of polymorphisms of BCD and CDO probes on barley, rice,
oat, wheat and sugarcane, from Mark Sorrells
7. Wheat quality evaluations
HMW glutenin subunit composition for 1500
wheat cultivars, from Bob
Graybosch
Flou
r, dough, baking and milling evaluations of wheat
cultivars, from
Bob Graybosch
14. Search the Annual Wheat Newsletter, Vol. 39
The
current issue, from Jim Quick
17. Grains files to browse
"DRAFT: Naming wheat DNA markers and
QTLs". Proposed nomenclature, from
Gary Hart
18. Large files to download
"Catalogue of Gene Symbols for Wheat", 1993
edition, from Bob McIntosh
20. GrainGenes administrative information
Submit your data to GrainGenes
|
