Wheat Transcriptome Sequences
We have generated three transcriptome datasets, for Triticum urartu, Triticum turgidum and a complementary set of published wheat transcripts not present in the T. turgidum set.
Open reading frames
"Complementary" wheat transcribed sequences
Cautionary note: Some of the T. turgidum assembled transcripts and predicted ORFs are chimeras between A and B genome transcripts.
If you use this data in your publications, please cite:
Krasileva, K.V., V. Buffalo, P. Bailey, S. Pearce, M. Soria, F. Tabbita, C. Uauy, International Wheat Genome Sequencing Consortium, and J. Dubcovsky*. Separating homeologs by phasing in the tetraploid wheat transcriptome. 2013 Genome Biology. In press.
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2.- Schreiber AW, Hayden MJ, Forrest KL, Kong SL, Langridge P, Baumann U: Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat. BMC Genomics 2012, 13:492.
3.- Cantu D, Pearce SP, Distelfeld A, Christiansen MW, Uauy C, Akhunov E, Fahima T, Dubcovsky J: Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence. BMC Genomics 2011, 12:492.
4.- Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K: TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics. Plant Physiol 2009, 150:1135-1146.