GrainGenes Information Resources ITMI Summer Workshop May 30, 2005

ITMI Coordination

Genomics page

TREP page

TESC page

New TESC data

GrainGenes 2.0

Migration Timeline

Migration Components

Colleague record in ACEDB

Colleague record in MySQL

Colleague class definition in ACEDB

Colleague schema in ACEDB and MySQL

Performance

Core GrainGenes data classes

Querying on all classes at once

The new Marker class

Quick Queries

GrainGenes 2.0 version

QTLs Quick Query

QTLs and markers in CMap

What remains to do

Where from here?

Grainotypes Summary

Grainotypes Quick Queries

Slide 26

Grainotypes Allele Report links to GrainGenes

Slide 28

Trait data

Trait data All traits at one location

Trait data Download as tab-delimited text

Trait data One trait at all locations

Trait data All data for one germplasm line

GDPDM

GDPDM Genomic Diversity and Phenotype Data Model

Somers SSR allele database in GDPDM

GDPDM schema with Daryl Somers' map display software (and data)

GrainGenes Programmers