NAME_ID = RLC_HORPIA2_AF521177-1
CLASSIF = Retrotransposon, LTR, Copia
COMMENT = complete element
TREPACC = TREP1162
ORGANIS = Hordeum vulgare 
SIZEDNA = 5152
SSOURCE = AF521177
RELDATE = 01-OCT-2002
SUBMITT = Thomas Wicker
REFEREN = Brunner et al.,Genetics. 2003 164:673-683.
ANN_TSD = 1-6, 5147-5152
ANN_LTR = 7-328, 4826-5146
PROTEIN = PTREP52
>gnl|TREP|TREP1162 Retrotransposon, LTR, Copia, "RLC_HORPIA2_AF521177-1"; complete element
CGACATGTAGATGTTAATCATGTTGCTCATGTAGGATTAGGAAAGAAAGC
CAAACCGAGTCCTAGTAGTATTAGGATTCCTAGTCCTAGTCTATTTCCGT
AGGCCCTTGGTGGACGTGTATAAAAGACACCCTAGGGGTGTTGATTGTAA
CACCAGAAAAACGAAAAGCAATACAAAGCAAAAGCTCGACACGGGCCTTT
AGCCATCAAATCCATCGATCAGTTTTTATTCGTGTCGCTAGTTACGCAAG
TTCCGTCAAGTAGCCGGCCGAAGCAAGAATTGTGTAGGCACGCCTGTACA
GCTACATACGCACGTTCAAAAGCCAACAATTGGTATCAGAGCCTCGACGA
TCTACGATATACGATGACGGACAGCGACGCTGAGTCGGTCAAGTCCTGGC
AGCGGCGGGTGCCAAGGCGAACAAGAACGGCGACAAGGTGAAGAAGGGCG
TCAAGTCAGCAACCAGTGGTGAAGGAACGAGCGGCGCTAACGTCCAGGCG
CATCGCAACATCCCCATCCAGTACCCGATGCTCACCGACGCCAACTACGA
CGTGTGGACGGTGAAGATGAAGATTATTCTTTGATCCCTTCGAGTGTGGG
AGGCCATCACGGACGACGACGTCGACGAGGAGCGCGATGAAGGTGCCATG
GCCGCCATAGCCCAGTCTGTGCCGGATTCCGTGCTGATGACATTGGCGGA
GTTCGAGACGGCAAGAGAGGCGTGGAACGCACTCAAGGAGATGAGGATCA
GAGAAGATCGCGTCACCAAGGCTCGGGCACAAGTGCTGAAGCGCCAATTT
CACAAGTTGCAGATGGAGGAAACTGAATCTGTGAATGACTACGCCATGCC
TCTTACTACTTTGGTGGGAGAGATCCGCGCGCTTGGTGCAAAGCTCGATG
AGACCGAGATCGTGCAGAAATTTTTCAGTTCTGTCACTGATAAATTCACG
TACATCATCGGCACGCTCGAGCAACTTTACGACATCGACGACATGACCAT
AACGGAGGCGATCAGACGATTGCCGACATGAGAAGAGAATGCTCCTGGCT
GTAAGAAACGCAAAAGAGGACGTATGAGACCAACTCATGTACTCGCGCAC
AGATCGGGAAGACCCAAGTAACAAAGTGAAGGCGAGATCGGTGGCGAAGG
CTCAACCAACACGAAAGGCGATGGACAAACCGAAAAAGGCAACGTGAAAA
CGCAAACCACAAGGTCATAGTAAGGCGGGACAATCTATAAGAGCAGAAAC
CACAGAACTAGGACTCGTCCGAAGTCAACTGCTATAACTGCAATAACATG
GCTCACCTTGCGAACAATAGTCCAAAGCCTAACAAGCGGGAGATCAAGGC
AAATTTGGCAAAGCAGGAAGACGAAGGTCCAGGTCTTCTGATGTCCGAAG
TTTGTGATCTCGCTGAAACGGTGGTTGTGAAACCAAGCCGAAAGGTGCTA
CTTCATGAGGAAAAAGTGACACCAAAGTTATCCGGTGATCAGAACGTGTC
GTGGTATCTAGACACGGGTGCCAGTAACCACATGACGGGGTGCAAGGAGA
AATTCCTCGAGCTGGAATTCGATGTTGAAGGCTCGGTCAAGTTCGGTGAT
GGTTCAGCTGTGGAGATTTGCGGGCAAGGATCTGTCCTCTTTGCGGGTCT
CACAGGCGAACATCGCATACTCACCGGAGTGTACTACATCCCACGGCTGC
GCAACAACATCATCTCTATTGGGAAGCTTGACGAGAATGGATGCAAGGTG
AATATAGAGAGCGGAGTGATGACGATCTTCGACAACCTCCGAAACGTGCT
AGCTCATGTTAATCGCACACGGAATACGCTCTATATCCTCAACCTTGATC
AATCTCAACCGGAGTGGTGGCTTGCCAAGAGTGATGATGATTTGTGGTTA
TGGCATGCTAGATTTGGACACGTTAACTTCTACGCCTTGGAAAAGATGTC
AAAGATGCAGATGGTATCCGGGATGCCAGTTATCGACCATGTTGATCGAA
TATGTGACGGGTGCTTGGTTGGAAAACAGCACCGCAGGCCATTCCCTGCT
CAGTCTACCTATCGTGCAAGTGATGCACTCAAGCTGCTCCATGGTGATCT
ATGTGGCCCTATCACCCCGGCAACTCACGCTGGAAAGAAGTATTTCTTCC
TTGTGGTAGACGACTACTCGAGATATATGTGGGTCATTCTCCTACGATCT
AAAGATGAGGCGTTTGAAGCGTTCAAGAAATTGAAGGCCGCAACAGAGAT
GGAACACAAGCTGAAGGTTCGCGCTCTACGGACAGATCGCGGCGGAGAGT
TTACGTCGAATTAGTTCAACGACTACTACGAGAAGATTGGCATAAAGAGG
TTCCTCACGGCACCTTACACGCCGCAGCAGAATGGGGTCGTTGAAAGGCG
CAATCGAACCGTCGTTGACATGGCAAGGAATTTACTCAAGAGCAAGAACC
TGCCGGGGACTTTTTGGGGAGAAGCTGTCTCGACGGCGGTCTATCTTCTC
AACCGGGCTCCAACGAAGGCGGTGGTCGGCAAGACTCCGTATGAAGCAAT
TTACGGACGTAAGCCGAATGTGTCTCATCTACGGACATTCGGGTGCGTGG
CACATGTGAAGACGGCGGAACCGCACCTCTCAAAGCTTGCCGATCGTAGC
ACCAAGATGGTGTTCATCGGATACGAGAGCAGTTCTGGCACCAAGGCATA
CCGTTTCTACGATCCACAAACCAAGCGTCTACGGATTTCACGCGACTTCG
TGTTTGAAGAAAACCAAGCGTGGAATTGGAGCGCCGCAGCCGACGATGCT
CCAAACAGTAACATATTTGCAGTTGAATTTCCAACTGATGATGATGCAGG
GGAGGATGTCCAGGTGATTGGCAAGACGCCCAAACCAAGGTGACCACAAT
GGTAGTGATCATCATGGTGCCGACACCGACGACGACGCGCATAGGTCGCA
AGGAGATAGCGACAACGCCGCGCACGACACAGGCGGAGATCTCGACGACA
ACATCGACAACGAGGCGCATAGTGACGACGACAATCAAGATGATGGTCAC
GGTCACGACGACTACGCCGACGACACGGATGTCGATGACACACCAAGGTC
TCAGCCGTCTTCCTCAAGTGCATCAACACCGACACAATTTGTGTCGCCTC
CCTCGCAAGCCACAACGGACTCCTCAGGGCCTCGTCGCTACAAGACCCTC
AAGAAAGTCTACAAGTACACAAAGCCAGTTACGCTCGAGTACTCCGGACT
ATGTCTGTTCGGAGTTGAGGAGCGGCGAACTTCATAGAGGCGAGCAAAAG
TCCTAGCTGGACGCACACCATGGATGAGGAGATGAAGGCAATTGAGAGCA
ATGGCACGTGGACTTTGGTAACCCGACCTCCAAACCAAAAGACGATAGGT
TTGAAGTGGGTTTACAAGTTAAAGAAGGACACAGAGGGTGCCATTGTGAA
GTACAAGGCAAGACTCGTTGCAAAGGGCTACGTACAACGTCAAGGAGTTG
ACTATGATGAGGTGTTTGCATCGGTTGCTCGAATCGAGACGGTGAGAGTG
CTCCTAGCTTTGGCAGCACAAGAGGATTGGAAGGTTCATCATATGGATGT
TAAATCCGCTTTCCTCAACGGCGATCTCACAGGAGAAGTGTACGTGGAAC
AACCCCTCGGCTACGAGAAGAAAGGCGAAGAAGGGAAAGTTTACAAGCTC
AAGAAGGCACTTTACGGGTTGAAGCAAGCGCCAAGAGCTTGGAACTCAAA
GTTAGACCGAAGTCTGGTCTCGCTCGGGTTCAAGAGATGTCCCCTCGAGC
ACGCAGTCTATACAAAGAACTCCAAAGGCTCAAACCTGTTAGTTGGAGTT
TATGTCGACGATCTGATTATCACCGGAGATAGCGTACAAGAAATTGAACG
TTTCAAGGCGCAAATGAAGAACAAGTTTAGCATGAGTGATCTGGGATTAC
TCAGCTATTACTTGGGCATCGAAGTGAAGCAAAGCTCCGGAGAGATTTCC
CTATGTCAATCGGCTTACGCGGTCAAGTTATTGGACAAGTGTGGCATGTC
AGATTGCTACGCGACACAAGTTCCAATGGACCAACGTCACAAGTTGAGCA
AGCGTAGCTCAAATCCGCCGGTGGACACCACAATGTATCGAAGCGTTGTG
GGTAGCCTAAGATACTTGGTGCATACCCGACCTGACTTGGCTTATTCAGT
CGGGATCGTGAGTCGTTTCATGGAGAAACCGACAACCGAACACATGAGCG
CGGTCAATCAAATTCTACGCTATGTGAAAGGCACAATTAATCTTGGCTGC
ACGTACAGAAAGGGAAAGGAAGGATTGATCCTTCGTGGATATTCAGATAG
TGACATGGCAGGTGATGTTGATGACCGAAAGAGCACAACGGGCATGGTTT
TCTACCTTGGCCCGAATTCGATTAGCTGGAATTCTCAGAAGCAAAAGGTG
GTGGCACTGTCTTCATGCGAGGCAGAATACATAGCGGCAAGCACGGCGGC
TTGTCAAGCAGTGTGGCTGAGAAGACTCCTAGCTATTCTTGCAAAGCGGG
AGGTGCAGAAGGTGTCACTGAAGATCGATAACCAAGCTGCAATCTCGTTG
TGCAAAAATTCGGTTCATCACGAAAGGAGCAAGCACATAGATACCCGGTT
CCACCATATCCGGGAGTGCATTGAAGAAGGGTTGATCGAGGTTCAACATG
TGAACACGAAAGACCAACTTGCCGATATTTTCACCAAGTCCCTCGGTCGA
CAGAAGTTCATCGAGATGAGGGGGAAAGTCGGAGTGCAAGAAGTGAAGTC
AAGCAACAAGATTAAGGAGGTGAATGTAGATGTTAATCATGTTGCTCATG
TAGGATTAGGAAAGAAAGCCAAACCGAGTCCTAGTAGTATTAGGATTCCT
AGTCCTAGTCTATTTCCATAGTCCCTTGTGGACGTGTATAAAAGACACCC
TAGGGGTGTTGACTGTAACACCAGAAAAACGAAAAGCAATACAAAGCAAA
AGCTCGACACGTGCCTTTAGCCATCAAATCCATCGATCAGTTTTTATTCG
TGTCGCTAGTTACGCAAGTACCGTCAAGTAGCCGGTCGAAGCAAGAATCG
TGTAGGCACGCCTGTACAGCTACATACGCACGTTCAAAAGCCAACACGGC
AT