NAME_ID = RLC_HORPIA2_AY643843-1
CLASSIF = Retrotransposon, LTR, Copia
COMMENT = complete element (5 bp TSD)
TREPACC = TREP1639
ORGANIS = Hordeum vulgare
SIZEDNA = 4295
SSOURCE = AY643843
RELDATE = 01-OCT-2004
SUBMITT = Katherine Caldwell
REFEREN = Caldwell et al., Plant Physiology 136: (2004). 
ANN_TSD = 1-5, 4291-4295
ANN_LTR = 6-293, 3966-4290
PROTEIN = 
>gnl|TREP|TREP1639 Retrotransposon, LTR, Copia, "RLC_HORPIA2_AY643843-1"; complete element (5 bp TSD)
CGCGCTGTGAGTTAATCACGTTGCCCTGTTCCTATAGGATTAGGAAACAA
AGCAAAACCGAGTCCTACTAATATTATGATACCTAGTCCTACTCTATTTC
CATAGTCCTTTGTAACACTAGAAGAAATAAAAAACAATACAAAGCAAAGG
CTCGACACGGGTCTTTAGCCATCAAATCCATTGATCAGTTTTATTCATGT
CGCTAGTTACTCAAGTTCCGTCAAGTAGCCGGCCAAATCAAGAATCGCGA
AGGCACGCCTGTACGGCTGCATACGCACGTTGAAAAGCCAACAATTGATA
CCAGAGCCTCGACGATCTACGATCTACGATGACGGACAACGACGCTGAGT
CGGTCAAGTCCGGCAAAGGCGGTCCCAAGGCGAACAAGAACGGCGGCAAG
GTGAAGAAGGGCGGCAAGTCAACAACCAGTGGTGGAGGAACGGGCGACGC
CAACGTCGAGGCGCATCGCAACATCCCCATCCAGTGCCCGATGCTCACCG
ACGCCAACTACGGCGTGTGGGTGGTGAAGATGAAGATTATTCTCCGAACC
ATTCGAGTGTGGCAGGCAATCACGGACGAAGACGTCAATGACGAGTCCGA
CGAAGGTGCCATGGCCGACATAGCCCAGTCCGTGCCGGATTCCGTGCTAA
TGACATTGGCGGAGTTCGAGACGGCAAGAGAGGTGTGGAACGCACTCAAC
GAGATGAGGATCGGAGAAGATCGCGTCACCAAGGCTCGGGCACAAGTGCT
GAAACGCCAATTTCACAAGTTGCAGATGGAGGAAACTGAATCGGTGAACG
ACTATGCCATGCGTCTTACTACTTTGGTGGGAGAGATCCGCGCGCTTGGT
GCAAAGCTCGATGAAACCGAGATTGTAGAGAAAGTTTTCAGTTCGGTGAC
TGATAAATTCACGTACATCATCGGCACGCTCGAGCAGCTTTACGACATCG
ACGACATGACCATAACGGAGGCGATCGGACGCCTGCGGACGTGGGAAGAG
AATGCTCGTGGCTGTCGGAAAGGCAACGGAGGAGGTAGTGACCAACTCAT
GTACTCGCGTGCAAATTGGGAGTCCCCAAGTAGCAAAGGAAGGCGTGATG
GGAACGAAGACTCAAGCAACGCAATGCGCGGCGGACAAACCGGCGAAGGC
AAAGGAAAAGGCAAGCCACAAGGTCGTGGTAAGCTGACCGATCTAAAGGG
CGGAAACAACGAAACTTGGATATGTCCGAGGTCAAGTGCTATAACTTCAA
CGAGATGGGTCACTTTGCAAATGATTGTCCGAAGCCTAACAAGCGGGAGA
TCGAGGTAAATTTGGCAAAGCAGGAAGACGAAGGTCCAGGTCTTCTGATG
GCCGAAGTTTATGATCTCGCTGAAACCAAGCCGGAAGGTGCTACTTCATG
AGAAGAATGTGACACCTAAGTTATCCGGGGATCACAAAGTGTCATGGTAT
CTCGACACGGGTGCTAGTAACCACATGACGGGATGCAAGGAGAAATTTCT
CGAGCTGGAATATGATGTTGAAGGCTCGGTCAAGTTTGGTGATGGTTCAA
ATGTGGAGATTTGTGGGCAAGGATCTGTCCTCTTCGAGGGTCTCACAGGC
GAACATCGCATACTCACCGGAGTGTACTACATCCCACGGCTTCGCAACAA
CATCATCTCTATTGGGAAGCTTGACGAGAATGGATGCAAGGTGAATATCG
AGAACGGAGTGATGACGATGTTCGACAACCTCCGAAACGTGCTAGCTCGT
GTTAATCCCACACGGAGTAGACTCTATATCCTCAACCTTGATCAATCTCA
ACCGGAGTGTTGGCTTGCCAAGAGTGATGATGATTCGTGGTTATGGCATG
CTAGATTTGGACATGTTAACTTCTACGCCTTGAAGAAGATGTCAAAGATG
GAGATGGTATCCGGGATGCCAGTTATCGACCATGTTGATCGAGTATGTGA
CGGGTGCTTGGTTGGAAAACAGCACCGCAGGCCGTTCCCTGCTCAGTCTA
CCTATCGTGCAAGTGATGCACTCGAGCTGCTCCATGGTGATCTATGTGGC
CCTATCACCCCGGCAACTCACGCGGGAAAGAAGTATTTCTTCCTTGTGGT
AGACGACTACTCGAGATATATGTGGGTCATTCTCCTACGATCTAAAGATG
AGGCGTTTGAAGCATTCAAGAAGCTGAAGGCTGCAACGGAGATGGAACAC
AAGCTGAAGGTTCGCGCTCTACGGATAGATCGCGGCGGAGAGTTTACGTC
GAACGAGTTCAACGACTATTGCGAGAAGATTGGCATAAAAAGGCTCCTCA
CGACACCTTACACGCCACAACAGAACGGGGTCGTTGAAAGGTGCAATCGA
ACCGTCGTTGACATAGCAAGGAGTTTACTCAAGAGCAAGAACCTCCCGGG
GATTTTTTGGGGAGAAGCTATCTCGACGGCTGTCTATCTTCTCAACTGGG
CTCCAACGAAGGCGGTGATCGGCAAGACTCCGTATGAAGAAATTTACGGA
CGTAAGCCGAATGTGTCTCATCTACGGACGTTCGGGTGCGTGGCACATGT
GAAGATGGCGGAGCCGCACCTCTCAAAGCTTGCCGATCGTAGCACCAAGA
TGGTGTTCATCGGATATGACAGGAGTTCCGGCACCAAGGCATACCGCTTC
TACGATACACAAACCAAGCGTCTACGGATTTCACGCGACGTCGTGTTTGA
AGAAAACAAAGCGTGGAATTGGAGTGCAGCAACCGACGGTGCTCCAAATG
GTAACATATTCATGGTTGAATTTCCAACTGATGATGATGGAGGGAACGAT
GTCCAGGTGGTTGGCAAGAGCCCAACCAAGGTGACCACAATGGTAGTGAT
CATCATGGTGCCGACACCGATGACGACGTGCATAGGTCGCAAGGAGATAG
CGACAACGATGCGCACTACACAGGCGGAGATCTCAACGACAACATCGACA
ACGAGGCGCATAGTGATGACGACAATCAAGATGATGGTCACGGTCATGAC
GACTACGCCGACGACACGGATGTCGATGACATGCCCGGGAGTCAGCCGTC
TTCCTCAAGTGCATCAACACCGACACAATTTGTGTCGCCTCCTTCGCAAG
CCACAACGGATTCCTCAGGGCCTCGTCGCTACAAGACCCTCAAGAAAGTC
TACAAGTACACAAGGCCAGTTACGCTAGAGTACTCCGGACTATGTCTATT
CGGAGTTGAGGAGCCGACGAACTTCGTAGAGGCGAGCAAAAGTCCTAGCT
GGACGCATGCCATGGATGAGGAGATGAAGGCGATTGAGAGCAATGCCACG
TGGACTTTGGTAACCCGACCTTTGAACCAAAAGGCGATTGGTTTGAAGTG
GGTTTACAAGTTAAAGAAGGACACGGAAGGTGCCATTGTGAAGTACAAGG
CAAGACTCGTTGCAAAGGGCTACGTACAACGTCAAGGAGTTGACTATAAT
GAGGTGTTTGCACCAGTTGCTCGACTCGAGACAGTGAGAGTGCTCCTAGC
TTTGGCAGCACAAGAGGATTGGAAGGTTCATCATATGGATGTTAAATCCG
CTTTCCTCAACGGTGATCTCACAGAAGAAGTGTACGTGGAACAACCCCTC
GGCTACGAGAAGAAAGACGAACAAGCGGAAGTTGACAAGCTCAAGAAGGC
ACTTTACGGGCTGATGCAAGCGCCAAGAGCTTGGAATTCAAAGTTAGACC
GAAGTATGGTCACGCTCAGGTTCAAAAGATGTGCCCTCGATGATCCGAAG
GACAGTCTACAAAGCACCGAAGAAGAGGTGAAGATTAAAGACACGACCAA
AAAGGAGTGTTGTCATGAAGCTATGGACGAGCCGACGACAGTAAAGCCGG
TCCATAAAATGTTGCAAGGGACGGCAAAGGCCATGCCGATGATAACAGTT
ACGAGAAGCAGCAATCGTGTTTGGGACCCAGGTCGAAAGTAAGGACATCG
TGATTAGGGGGTGAATGTGAGTTAATCACGTTGCCCTATTCCTGTAGGAT
TAGGAAAGAAAGCCAAACCGAGTCCTAGTAGTATTAGGATACCTAGTCTT
AGTCTATTTTCATAGTCCCTTGTGGACGTGTATAAGAGGCACCCTAGGGG
TGTTGCTTGTAACACCAGAAAAAACGAACAACAATACAAAGCAAAGGCTC
GACACGGGCCTTTAGCCATCAAATCCATCGGTCAATTTTATTCGTGTCGC
TAGTTATGCAAGTTCAGTCAAGTAGCCGACCGAAGCAAGAATCGCGTAGG
CACGCCTGTACGGCTGCATACGCACGTTCAAAAGCCAACACGCGC