NAME_ID = RLG_Lolaog_AY643843-1 CLASSIF = Retrotransposon, LTR, Gypsy COMMENT = complete element (5 bp TSD) TREPACC = TREP1644 ORGANIS = Hordeum vulgare SIZEDNA = 10708 SSOURCE = AY643843 RELDATE = 01-OCT-2004 SUBMITT = Katherine Caldwell REFEREN = Caldwell et al., Plant Physiology 136: (2004). ANN_TSD = 1-5, 10704-10708 ANN_LTR = 7-4023, 9931-13924 PROTEIN = >gnl|TREP|TREP1644 Retrotransposon, LTR, Gypsy, "RLG_Lolaog_AY643843-1"; complete element (5 bp TSD) GCTATTGTCGGGAGGATAACCCCGGGATAGGCTCATCAAGCCTGTTCCTT CATTTCCGGCCCAATGGACATGTAGGTATGGAGATTCCCAAGGCCCAAGT CTTCTGACCGGCTAGGCATCACATGCCGGCTGGAAGACGAGGCAGCCACC TTTCTGGCCGGCCAGGCAGCCCCTGCCGGCTAGAATGCAGGCGGCCTCCC CTTCAGGGTCGGCCTGGTCCCGCCAGCCGGACTGAGGAGGAGGCGGCCAC CCTCAAGCCGGCTGACCAAGAAGGCTAGCCGGCCGAGGATCACAAGTCAC ATCAGATCGTAGGTCAGGAAGAGACCTCACGATTAAAGGTAGCTACGCAT CAGCAAAGGTACAGGATCAGGGCGCCCGACAGGTACGAGCGTCGACGGCC ACGCCGCTGACCTACCCTGGCTTTGATCCATCACCTAGCATAGTGTCGGA CCGTCACACTCCCACTCCATTACTGCACTCGGCGTGGGGAACAGTGGAGG CGGTCGTACTGCCTGCCCATGAAGAATCTCGTGGGGCGACGTTTGACGTA CAACGCGTGCTCAGCGTCAACCTTACGCGGGAGCCCCATTGGCCAGCCGG CGGGTCCCACAGGCAATCGAGACCATGCAGTCGGCTGCCCCCTCATCGAC AAGACAAGACCCTTGTGGGCCCCTGGCCAGCCGGCGAAGCAGCTAGCCGG GTCCCACGCCTGTACCCTTTATCCATATTGTAGGCCGGCGGGTTCGTCTA TAAAACCCTTCGGCCACCCCCATGCAGAGGGGCCGATCATTCACCAGTCA TTCTACACTGCACACTCAGCAACCCATCGAGAGAGAGGTAGAGACGAGCC GGCTGTCCCTTCTTCCTCCTCCGAACACAGCTCCAGGAGCGACATTGTAC TCTGTTCCCATACATCAAACACACCAGCAGGATTAGGGGTATTATCTCTA CGAAGAGCCCTGAACCTGGGTACATCGTGCGTCCCATGCGTGTACCAACC TCATTCCCAGCGCCCACCTTTGTCCCTTCGGTTCTCACCGACTTTAGCCT ACCTATGGCATATGTTGTGAGTATTCGCCGATATTTGGCGCCCACCGTGG GGCCGATCGCGGCATCGGCTGGCTTTACGCGCTGGGCGGGGCCCCACACC TACACCACCGGATGCATCGCGTCAGGATCAGTCCGCATGCCCGTGCAGCC TGCTTTCGACGAGGCAACACCCATGATGATCGACGTCCCCGTCCGCCATG CGTATTCGGACAAAGATTCTGATGACGAGGTGCTCCCTAGCATCGTCGTC GCCGCCATGGAGAACCTCAGCGTCCTCTTCAGCGACCTTCGTCTCAACAA CGCCCCGCGCTACTTCGGCAAGGACTACGACGTTGAGGCGCTCTGCGGCA GCTTTAGCAGGCTCTCTATCGCTGAGATGCCTACCCACGACGTTTACCCC AGTAACGTCCTCATCTTCGACGGCCCTCCACCATCGGTAGGGTTCTTCAC CCCATACCATGTTGCTGTCATCTCCAACACCGTGGAGGTGATGGTTATCG GTGCTGGCACCAGCACGGCTCCCGGCAAGGTGTCCGTAGGCGTCGGTGAG CCCGCTGCGGCCGCCGCTGATACTCTTCGGGACGCCATCGCCGGCCTGAA GACACCGGTCACCGCTTCCGCCAACCCTGCAGATGCTCGGGCCCGCTGGA GGAGGCCCGCAAGCGTATCTTGGAGGAGGGCATCGCCGTGGCCTCGGCGA AACGTCGGTTGGAGGCTACGCAGCGTGTGTATAACTCCGCATACGGTCTC ACTCCAATTTCCGAGGCCCCTAGCCGGCTTGGATCGGTCCACAGCCGCGG CCGGTTCACCGCCGAAGTTCTAGCTGGTGATCTGCCCACCTACGAGACTC CTGCGGGCAACATGCGAGCGGCGCATGCAGCCATGGAGGAGATGGCAAGC CTGGAAGGCGAGGAGCGCGCCTTCCAGGAGAAGCGTGTCAAGGACCTCCT TGACGCCTCCAACCAGCAACACGCTCGGATTGACCCTGGTCAGGCTCAAT CGGAGTCCCCGGGACCAAACTCGGGGGCTCGCCACAACTCTAGCGGCCAA CACCACGCCGAAGGATCTTCCTCGCATCGCCCTTCCGGCTGGAGGGGCGA GGGAAGCCAAGACCGGCGCTCGCAGCGCCAGAGCGAGCACACTTCGGGCT TACGTCGCGGGGGCGACGAGGGCGATTCGGAGTACGGGGATCATCCCCCG CGAAGAACTCACGCCTCTGGCTCCCGAGGCGCCTCCCCTCTCGCCACCGG GGATGGCGCCCCCGCCACCCAGGATGAGCGGGACGCTCGCCGACGTATCA TCGCCCTCGCCCATTCGGCCCTCCTAGAGGAAGACGGACCCGTTGGTCCG GCATGCTTCGGCCCCCGGATCCAAGGGGAGCCGTTCCCCCGAGGTTTCAC CTTTCCTCGGGATACGCCGAAATACAACGGCACGGCCAAGCCAGAAGACT GGCTGATCGACTACACCAGGGCCGTAGGCATCCCCAGGGGCAACAAGCGC GTAGCGGTTCTCTACGTGCCACTCATGCTGGCTGGCTCGGCCTGGACTTG GCTTAACAGCCTCCCGGCCGGCAGCGTCAACTCCTGGGTGGACTTCAAGG AGGCATTCGTCCGCACCTTCACTAGCACATACAAGCGCCTCGGCCGGCCC CGCGAGCTGGCCATGTGCGTCCAGAAGGCCGACGAACCCCTTCGCGACTA CGTCACCTGGTGGACCGAGCTCCGCAACTCCTCCGAGGGGGTGCATGAGG TACAAGCCATCCAGTACTTCATCGACGGATGCCGAGACGGCACCCTCCTC AAGCACAAGCTCATGTGCGCCGAGCCCACCTCTTTGGCGGTGCTCATGGC CAAGGCGGACAAGTATGCCACGGCCGACTCCGCAATGCGCATCAAGGTGA CCCTCTTGGACAAGGTTGTGCCTGCGCCAGCTACTCCCAAGCCAGTTGGG GACAACCGAGGCGGCCAGAATAACTACAAGCGCAAGGCGGATCAGATGGA TCCCCGCTCCAACAACAAGCTAGTGGCCAATGTGGAGGGCGAGGCGTCGG CTTCTCAAGCCGGCCCTCCACGAAAGCGTCGCAATCAGGGCAACCCCAAC TGGCTGCCCAAGCAGTCTCTCGAATAGCTGCTTGACGCCCCCTGCAAGAT ACATTCTGGGGCGACACCGTCTACCCATACCCTTCGACAGTGCAGCGTCG CACGCCGGCTGTCGCAAGGGGAGGGCCTGCCGGCTTCTCCGGGTGTGCAG GCGGCGCCTCGTGCACCGGCTCCCAATCACGCTCCGCTTCCGCCGCCACC GCCTCGCGATGACGGTCCTCACCCTGACGACTATCCTCACCAAGACGGAG CGTTCGTCGTCTTCACCAGCGAAGGCAACGACAAACACAGCCTGCGCCAA AGACGGCGCCAGGTAAACGCCACTGTCCCCCCCGGTTCCCCAGTACATGC ATTGGTCCGACAAACCAATCACATGGAGCCGGGTGGACCATCCTGCGGTG ATGCCCAACCCGGGGTCATACGCACTCGTCCTCGCCCCACCTTCACCTCC AAAAGGCTCACCTGCCGATTCTCCCGGGTGCTGGTCGATGGCGGCAACAA GATCAACATCCTCTACCTCGACACTCTCCGCAAGCTCGGGCTCAAGGAGA CAAACGTCCTGCCAACCAGCACTGTCTTCCATGGCATCGTGCCTGGGTAG TCATGCTCGCCCATCGGCAAGATCCAGCTGGACGTCCTCTTCGGCGACAA GGCCCACTTCCGCTGAGAGTCCATATAGTTCGAGGTAGTGGACCTCACTA GCCCGTATTACGCGTTGCGGGGGAGACCGGCTCTGGCCAAGTTCATGGCT ATTCCGCACTACACCTACCTGAAAATGAAGATGCCGGGTCCCAAGGGCAT CATCACTATTGTTGGCGACTACAAGAAGTCGCTCGAGTGTGCCCAAGATA GCAGCCGCCTCGCCGACGCCTTGGTGATTGCTGAGGAGAAGCGGCAGATC GACCGGCTCGTGGCCCAGGCTACCGAGCAGCCGGCGATTCCTTCTCCTCC GTCCCAATCGGCCGGCGAGGGCTCTTTCAAGCCGGCTAAAGAGACCAAGC AGGTCCACTCGACCCTGCCAACCCGAAGCAGTGCATCACCATTGGGGCTG CCTCAGCCCAAAATAGGAAGGCGAGCTCGTCGACTTCCTCCGTGAGAATC GGGACATCTTTGCATGGTCCCCCAAGGACATGCCGGGTGTTCCGAGGAAG TATGCCGAGCACAAACTTCACATATGAACGGATGCAAAGTCGGTGAAACA ACCTTTGCGCCGCTTCACCAAGGGGAAGCGGCACACAATCGGAGAAGAGA TCACCCGGCTCCTTGCAGCCGGCTTCATCATGGAGGTTTTCCACCCAGAC TGGCTGGCGAACCCAGTCCTAGTGCTGAAGAACAACACATGGCGAATGTG TATCGACTACACTAGCCTGAATAAGGCCTGTCCGAAAGACCCTTTCGCGT TGCCTAGGATAGATCAAGTGATCGACTCCACTGCAGGCTGCGAACTGCTG TCGTTTCTGGATGCTTATTCGGGCTACCATCAAATCCAGCTGGATCCAGC TGATCGCCTGAAGACCTCCTTCATCATGCCCTTCGGGGCCTACTGCTACA CCACCATGACGTTCGGTCTGAAGAACGCGGGTGCGACATTCCAACGCTGC ATGCAACAGTGCCTACTGCCACAGATTGGCAGAAACATCCACGTCTATGT GGATGACATCGTCGTCAAGACGAAGCAGCACTTCAGCCTCCTCGACGACC TGCGGGAGACATTCGCCAATCTACGTGAATACAAGATCCGGCTCAACCCT GAGAAGTGCGTCTTCGGGGTCCCAGGCGGCAAACTCTTGGGGTTCTTCGT ATCCGCCCGCGACATCGAAGCAAACCCTCAGAAGATCAGCACCATCGAGC GGATGGTGAGGCCGGCTCGGATCCTCGACATCCAGAAGTTCGCCGGCTGC TTGGCATCCCTCAGCCGGTTCGTCAGCCGGCTTGGCGAGAAGGCCCTTCC ACTCTACCAGCTCATGAAGAAGATGACGAAGTTTGAGTGGAACGACCAGG CGGACGAAGCCTTCCACGACCTTAAGCGGGTAATCTCGAGCCTGCCAATC TTGGGAGCCCCATCTGAAAGGGAACCCATACTCATATACATCGCGGCGAC CACTCGCGTGGTCAGCGTAGTGTTGGTAGTTCAGTGCAAAGAGGAAGGCA AGGCCCTGCTAGTGCAGCGCCCTGTCTACTACCTTAGCGAGGTCTTGTCC GCCTCTAAGCAGAACTACCCTCATTATCAGAAAATGTGTTATGGTGTTTA CCTTGTTGCAAAGAAATTAAAACAATACATCCAAGAGCATGCCATCACTG CGGTGAGCATTGCTCCGCTCTTAGAGATCATGGGCAACCGTGATGCCACG GGCAGAATTGCCAAATGGTCCATCGCCATGGCGGACCATGATATTCGGTA CAAGCCTCGCACCGCCATCAAATCACAGGTGGTGGCCGACTTCTTAGTCG ACTGGGCCGAGACCCAGTTCGAGCCACCGCCTCCAGACTCCACGCATTGG CGGATGCACTTCGACGGCTCGAAGATGCGGACAGGACTGGGAGCCGGCAT CATCTTGACGTCTCCAAAAGGGGACCAGCTCAAGTACGCTCTCCAGATCC ATTTCGCTGCCTCCAACAATGTCGCCGAGTACGAAGCACTGGCTCATGGC CTCCAGCTTGCCAAGGAGATCGGCATCCGGCGGCTCATATGCTTCGGCGA TTCAGACTTGGTGGTGCAGCAGGTCTCTGGCGAATGGGACGCCAGGGACG CCAACATGGCAAGCTACCACTTCCTCATCCAGCAGCTCAGCGGCCCCTTC GAGGGTTGTAAGTTCCACCATGTTCCCAGGGCGGAAAATGAGGCGGCCGA TACGCTGGCAAAAATTGGCTCCACGAGACAGGCCATTCCAGCCGGCGTTT CCCTCGAGCAACTCCACAAGCCGTCTCCTGAGTCGTCATCAATCTTAGTA CCGGCCGACTCTATGATACGAGCGCCGCCGGCTCCGCCAGTTATGCCGGC TGTGGACCCCACGCCGGCTGCACTGACGGCACCAGCTCCAAATACGGCAC CGACTGAGTCTACGGTGCAAGCGCCGTCAGCTCCACCAACTACGCCGGCT TCGGATCCTAATCCGGCTCCATTAGCGCTACCAACTCCAACAGCGGCACC AGCTACAACGACAACCCCGGCTCTGTCCGGGCTCGAATCCTCCCAGTGGG TGGACGTCATGGAGATAGACGGTGAACCGGCTGCAGTAATAGCACCGGAG ACGCCATCAAGCTCGGGGGCTGCAGAAGCCTCCAACAGTCAAGACGAAGC AGAGGCGACCCTTGTGTCGGCTCCATCATGGGCTCAGGCCATTCCGGCCT TCCTTCTTCACGGCGAACTTCCTCAGAACGAGGCGGAGGCGAGACAGATC CAGCGCAGGTCCGCCGCCTACGCCATCATCAATTGCGAACTGGTGCGACG CAGCACGACAGGCGTGTTCCAACACTGCGTCGAATCAGAAAAAGGGCACG AGATCCTCAGAGACATCCACCAGGGGAATGTGGGCATCATGCTGCCTCCA GAACCCTGGTGGCCAAAGCATTCCGCCATGGATTCTACTCGCCCACGGCC CTCAAGGAGGCCGTGGATCTGGTGGACAAATGCGAAGGCTGCCAGCGCTT CAGTGCACAAAGCCATATGCCGCCCTCAGCGCTGAAAACCATTCCCTTAT CATGGCCGTTCGCCGCCTGAGGACTGGACATGGTCAAGCCCTTCAAGACG GCTCGCGGAGGGATGCCACATCTTCTGGTAGCCGTCGACAAGTTCACCAA GTGGATCGAAGCCAGGCCCATCAAGAAGCTTGACGGCCCCACTACTGTCA GGTTCATCACAGACATCTCTGTCCGATATGGCGTTCCCCACAGCATCATC ACCGACAATAGCACCAACTTCGCCAAGGGCGCCCTGGCGCTCTACTGTTC CAAGGTAGGCATCCGGCTCGACTTGGCCTCAGTGGCACACCCTCAGTCAA ACGGCCAAGCGGAGAGGGCCAACGGCCTGATCCTAGCCGGCATGAAGCCA AGGCTGGTGGCACCACTGGCCAGGTCAGCCGGCTGCTGGATTGAAGAACT GCCGGCTGTGTTATGGAGCATCCGCACCACACCCAACCGGTCGACCGGCT TCACTCCATTCTTTCTGGTATATGGGTTTGAGGCTATTATCCCCACGCAT GTCGAATTCGACTCGCCTTGGGTCACCCTATACACAGAAACGGAGGCAAA GGAGGCTAGAGAAGACGGTGTGGATCTCCTCGAAGAAGCAAGGGACTTGG CTTTGAGCCGGACGGCCATCTACCAACAAAAGCTGAGATACTACCACAGC AAAAAGATCAGGCCTCTCTTTTTCAGGGAGGGAGACTTGGTCCTCAGAAG AATCCAGCGCACTGCCTTCCAATACAAGCTCTCACCCCCCTGGGAGGGAC CTTTCATCATCAATAGGGCGCTGCACAACAACGCTTACTACCTGATTGAC GCCAGAAGCCAAGGAAGCAAAATAGGGACGACTCCGGCCAAGAAACGGAG CGCCCATGGAAGCGGCGTTGCTTCGCCCGTTCTATTGCTAAAAGGCAGAA GACAAGCAAAGGAAAGAGCATGCACATGTATCTTCCTCCCTCTTCAGGGA ACAACGAAGGCAATAAAAATAACATGCTCCATGTTTATTTTTGCCAAGAG TTTTCACTCAGTGTACGGGCTACACATCGTACCACCTCTTGCCAGCTTAA TCAAGCTCGGAGGCTACGCAGCGCGGCCCCTTGCTAGCTTTAAACAAGCT CGGGGGCTCTCCGGCCGCCTGAACGGTCCACCCTTATAACGGACACATAG TGTACCGGCTAACTCCTGGTCCGTCGCTCGAGCCTGTGGGCTGGCTCCGG TCGCTCGGTTCGCGATATGACGCCAGGTCAGGTCGGATACATGCAAAGTC CGGCTATACTTGGGACGACCGGCTCGGGCTGGCTCGATCGTATATACGAT CTCATTCAAGACTCAAGACGGCCTCTGACTGCCGGGAACAAAAATACGAC AAAAAGAGCATGCTCCATGCTTCTTCTTGCTAAAGAGTTTTCACTCAGTG TACGAGCTACACCGCATACCACCTCTTGCTGGCTTAATCAAGCTCGGAGG CTATGTAGCGCGGCCCCTTGCTAGCTTTAAACAAGCTCGGGGGCTCGCCA GCCGCTCGAACGGTCCATCCTTTTAGACGGGCACATAGTGTACCGGCTGA CTCCTAGTCCTTCGCTCGAACCTGCGGGCTGGCTCCGGTCGCTCGGTTCG CGATATGACGCTAGATCAGGTCGAATACATGCACAGTCCGGCTATACTAG CGACGACCGGCTCGAGTTGGCTCATTCAAGCCAACCTCTGATTGGCTTAT GTCTTGTTCTTTATGTCTTGATGGCTTTGGATAAGAGAAGTCAACGAGGA ATCAAAAGACGGGATCATAAGACAACACGCTTGGTGACGAATATAATGCT GAATATATACATTCATAAAAGCATTGGCCCACGACCCACGTTCGTTACAT CCCTCCGGGGGTAGAACCAAATACACAGAAGGACATCGGTTATGGGACAG GGGCCTCAGTGGTCGTCTCGGCCACTGCTCCTGATGTGGTATCATCATCG CCTCCGGCTCCTCCCGAGGTGGTTGCGCCGTCTCCCCCGCTGCGACCCCC GGCTCCGCTGATCCCTGAGTCGGCATACGCCCCGCAACTGCTCCAACTCG ACCCGGCCAGCTGCCTCGAGCTCCTTCTTCTCCGCCTGAAGAAGGTCCAG CTGCTCTTGGAGCCGGCCGCCGGCGTCGCGCAGGGCATCACGCTGCGCGG CAACCTCGCCCAGCCGGGCTTCAAGCTCGGCAATCCGGCTATCAGCCCCT AGGTGCTGGTCCCGAAGCTCGTTGTAGCTTGTACCTGAGCACCGTAAAGC GCATGCGAAAGGGGAGAGAAAGGGAACATGATTAAGATTCAACCTGGTTA AAATCCTAACTAGCCCGATTCTCGGGGGCTACACCGAGTGGGTGCGCTTG CGCGCCCCCACTGAAGAAAAATGTGCAGGGAAAAAAGGCCTCCAAGAGAT TCGGACCTGTTGGCAATCAACCCGCCCGATTCTCGGGGGCTACACCCAGT GGGTGCGCTGTCGCGCTCCCACTGACATCAAGAGAAGAGAAAAAAGTGCA AAGAAAAACCAAAAAAGGCAAGGCCTACCTGGGTGCGGGCTTCCAGGCGC TCCATGTCGCCGCATACCATGCGGGCCGCCTGCTCCACCTTCGACCGGCC GCTGGAAAACAGCGTCACGAGCTCCGGTATGCCGGAAAGAACGGTGTCGG CGGGCATTCGCGGGCGGGCCAAGTTCGCCTCCCGCCATGTCTTCATGGGC CAGCTCGCAGCCCTGCCCCTGGCCCTTGGCGCAACAGGGCCGTGCTGGGG GACGACGATGGCGCCGGCTCCTGGTGTCGGGGGGATAACCCCGGGGTAGG CTCTTCAAGCATGTTCCTTCATTTCTGACCCAATGGACATGTAGGTATGG AGATTCCCAAGGCCCAAGTCTTCTAACCGGCTAGGCATCACCTGTCGGCT ATAAGACGAGAGGCCACCTTTCTGGCCGGCCAGGCAGCCCGTGCCGGCTA GAATGCAGGCGGCCTTCCCTTCAGGGCCGGCCTGGTCCCGCCAGCCGGAC TGAGGAGGAGGCGGCCACCCTCAAGCCGGCTGACCAAGCAGGCTAGCCGG CCGAGGATCACAAGTCACATCAGATCGTAGGTCAGGAAGAGACCTCACGA TTAAAGGTAGCTACGCGTCAGCAAAGGTACAAGATCAGTGCGCCCGGCAG GTACGAGCGTCGGCGGCCACGCCGCTGACCTACCCCGGCTCTGATCCATC ACCTAGCATAGTGTTGGACCGTCACACTCCCACTCCATTACTGCACTCGG CGTGGGGAACAGTGGAGGCGGTTGTAGTGCCTACCCATGAAGAATCTCGC GGGGCGACGCTTGACGTACAGCGCATGCTCAACGTCAACCTTACGCGGGA GCCCCATTGGCCAGCCGATGGGTCCCACAGGCAATCGAGACCATGTAGCC AGCGGGCCCCTCATCGACAAGACAAGACCCTTGTGGGCCCCTGGCCAGCC GGCGAAGCAGCCAGCCGGGTCCCACGCCTGTACCCTTTATCCATATTGTA GGCCGGCGGGTTCGTCTATAAAACCCCCCGATCGCCCCCCATGTAGAGGG GCCGATCATTCACCAGTCATTCTACACTACACACTCACCAACCCACCGAG AGAGAGGTAGAGACGAGCTGGCTGCTCCCTTCTTCCTCCTCCCAACACAG CTCCAGGAGCGACATTGTACTCTGTTCCCATACATCAAACACACCAGCAG GATTAGGGGTATTATCTCTATGGAGAGCCCTGAACCAGGGTACATCGTGC GTCCCATGCGTGTACCAACCTCGTTCCTAGCGCCCACCTTTGTCCCTTTG GTTCTCACCGACTTTAGCCTACCTATGCCATATGTTGTGAGTATTCACCG ACAGCTAT