cDNA Libraries

cDNA Libraries


This page last updated June 01, 2001.

cDNA Libraries from Triticum aestivum cv. Chinese Spring
cDNA Libraries from other Triticum aestivum cultivars
cDNA Libraries from other Triticeae species
ITEC
Proposed Libraries


cDNA Libraries from Triticum aestivum cv. Chinese Spring

See the expanded version of this table here (provided by T. Close)

For detailed library description click on library name.

Albany Library #
Tissue
Developmental Stage
Treatment
Sequencing Status
Date Library Received
ESTs produced
% singleton candidates
% library unique ESTs
Tissue Source PI
Library Source Lab
TA006E1X
shoot
seedling
etiolated
Done
7/11/99
1839
70.3
24.6
T Close, UCR
T Close, UCR
TA006E2N
shoot
seedling
etiolated
Done
4/17/00
1702
35.5
4.9
T Close, UCR
H Nguyen, TTU
TA006E3N
shoot
seedling
etiolated
In progress
03/07/01
-
-
-
T Close, UCR
H Nguyen, TTU
TA005E1X
whole
seedling
dehydration
Done
7/11/99
796
87.8
26.1
T Close, UCR
T Close, UCR
TA005E2S
whole
seedling
dehydration
Done
7/19/00
921
67.9
-
T Close, UCR
H Nguyen, TTU
TA008E1X
root
seedling
etiolated
Done
9/27/99
4017
69.2
24.5
T Close, UCR
T Close, UCR
TA008E2N
root
seedling
etiolated
On hold
4/11/00
-
-
-
T Close, UCR
H Nguyen, TTU
TA008E3N
root
seedling
etiolated
Done
4/17/00
4310
62.1
20.9
T Close, UCR
H Nguyen, TTU
TA007E1X
whole
seedling
cold
Done
9/27/99
943
85.1
25.3
T Close, UCR
T Close, UCR
TA007E2S
whole
seedling
cold
On hold
7/19/00
-
-
-
T Close, UCR
H Nguyen, TTU
TA007E3S
whole
seedling
cold
In progress
03/07/01
-
-
-
T Close, UCR
H Nguyen, TTU
TA019E1X
spike
pre-anthesis
white to yellow anther
Done
3/20/00
10544
63.9
30.9
T Close, UCR
T Close, UCR
TA018E1X
spike
post-anthesis
5 to 15 DAP
Done
3/20/00
2860
69.8
24.4
T Close, UCR
T Close, UCR
TA017E1X
spike
post-anthesis
20 to 45 DAP
Done
3/20/00
1076
51.0
14.1
T Close, UCR
T Close, UCR
TA016E1X
crown
seedling
vernalized
Done
3/20/00
2286
80.4
30.1
T Close, UCR
T Close, UCR
TA015E1X
whole
14 day old seedlings
2 hour heat
Done
3/20/00
824
80.9
30.6
H Nguyen, TTU
T Close, UCR
TA031E1X
flag leaf
anthesis
heat
Done
6/27/00
977
81.5
33.3
H Nguyen, TTU
T Close, UCR
TA025E1X
green leaf
full tillering stage
normal
On hold
5/24/00
-
-
-
H Nguyen, TTU
T Close, UCR
TA026E1X
spikes
pre-anthesis
unstressed
On hold
5/24/00
-
-
-
K Gill, UNL
T Close, UCR
TA032E1X
spikes
post-anthesis
heat 5-20DAP
Done
6/27/00
1013
79.9
33.8
H Nguyen, TTU
T Close, UCR
TA036E1X
leaf
full tillering stage
drought
Done
8/8/00
641
84.2
30.4
H Nguyen, TTU
T Close, UCR
TA037E1X
sheath
seedling
salt
Done
8/8/00
964
70.7
24.8
J Dvorak, UCD
T Close, UCR
TA038E1X
crown
seedling
salt
Done
8/8/00
943
86.7
28.8
T Close, UCR
T Close, UCR
TA042E1X
seed
post-anthesis
3 to 6 DAP
In progress
11/06/00
692
80.3
64.5
JP Gustafson, UMC
T Close, UCR
TA047E1X
root tip
seedling
unstressed
In progress
03/02/01
-
-
-
JP Gustafson, UMC
T Close, UCR
TA056E1X
root
full tillering stage
drought stressed
In progress
05/01/01
-
-
-
H Nguyen, TTU
T Close, UCR
TA057E1X
root tip
seedling
aluminum stressed
In progress
05/01/01
-
-
-
JP Gustafson, UMC
T Close, UCR


cDNA Libraries from other Triticum aestivum cultivars


For detailed library information click on library name.

Albany Library #
Cultivar
Tissue
Developmental Stage
Treatment
Sequencing Status
Date Library Received
ESTs Produced
% singleton candidates
% library unique ESTs
Tissue Source PI
Library source Lab
TA001E1X
Cheyenne
endosperm
5-30 days post anthesis
control
In progress
9/27/95
2729
54.0
19.7
O Anderson, USDA/ARS
O Anderson, USDA/ARS
TA001E1S
Cheyenne
endosperm
5-30 days post anthesis
subtracted
In progress
-
274
87.9
27.4
O Anderson, USDA/ARS
O Anderson, USDA/ARS
TA001E2N
Cheyenne
endosperm
5-30 days post anthesis
normalized
In progress
03/02/01
-
-
-
O Anderson, USDA/ARS
H Nguyen, TTU
TA009XXX
Sumai3
spikes
mature plant
challenged with Fusarium graminearum
In progress
2/16/00
4750
75.3
33.7
G Meuhlbauer, UMN
G Meuhlbauer, UMN
-
Sumai3
spikes
mature plant
challenged with Fusarium graminearum
-
-
727
-
-
John Fellers, Bikram Gill, KSU
John Fellers, Bikram Gill, KSU
TA027E1X
TAM W101
leaf
full tillering
drought stress
Done
5/24/00
911
79.7
30.7
H Nguyen, TTU
T Close, UCR
TA012XXX
Brevor
embryos
mature, dormant seeds
seeds imbibed in 20 microM ABA for 12 hrs at 30C
Done
-
2211
79.5
35.1
Kay Walker-Simmons, WSU
Kay Walker-Simmons, WSU
TA049E1X
Brevor
embryos
mature, dormant seeds
plants grown under conditions favoring seed dormancy
In progress
03/02/01
555
76.0
26.7
Kay Walker-Simmons, WSU
T Close, UCR
TA048E1X
BH1146
root tip
4-day old plants
Aluminum stressed
In progress
03/02/01
312
73.7
23.7
JP Gustafson, UMC
T Close, UCR


cDNA Libraries from other Triticeae species


For detailed library information click on library name.

Albany Library #
Species
Cultivar or Accession
Tissue
Developmental Stage
Treatment
Sequencing Status
Date Library Received
ESTs Produced
% singleton candidates
% library unique ESTs
Tissue Source PI
Library Source Lab
TM011XXX
Triticum monococcum
DV92
shoot apex of tillers
5-week old plants
vegetative apex
Done
-
2857
79.1
37.8
J Dubcovsky, UCD
J Dubcovsky, UCD
TM043E1X
Triticum monococcum
DV92
shoot apex of tillers
7-week old plants
early reproductive apex
Done
12/01/01
2647
71.7
30.8
J Dubcovsky, UCD
J Dubcovsky, UCD
TM046E1X
Triticum monococcum
G3116
shoot apex
1-month old plants
vernalized
In progress
02/28/01
-
-
-
J Dubcovsky, UCD
J Dubcovsky, UCD
SC013XXX
Secale cereale
Blanco
root tips
young roots
control
Done
2/17/00
778
90.4
49.0
JP Gustafson, UMC
JP Gustafson, UMC
SC010XXX
Secale cereale
Blanco
root tips
young roots
stressed for Aluminum
Done
2/17/00
1199
84.2
43.6
JP Gustafson, UMC
JP Gustafson, UMC
SC024E1X
Secale cereale
Blanco
anther
mature plants
control
Done
5/24/00
4640
56.7
26.2
JP Gustafson, UMC
T Close, UCR
TT039E1X
Triticum turgidum
Langdon-16
whole plant
mature plant
normal
Done
8/8/00
1194
74.7
25.5
S Kianian, NDSU
T Close, UCR
AS040E1X
Aegilops speltoides
F2s from 2-12-4-8-1-1-1-(1) x PI36909-12-811-(1)
anther
premeiotic stage
normal
Done
8/8/00
2466
70.5
29.0
J Dvorak, UCD
T Close, UCR



ITEC

For an expanded version of this table, click here


Triticeae species of origin Genotype or cultivar or accession of origin Tissue Developmental stage Condition* Vector Size of library (est. no. of clones) Contact (if library is available) ITEC contact if source of ESTs
Libraries from which sequences will be contributed to ITEC
Aegilops speltoides . anthers immature; at meiosis normal conditions . . . Jan Dvorak
. . . . . . . . .
Lophopyrum elongatum Accession D root seedling salt-stressed with 250 mM NaCl for 6 hours under hydroponic conditions. PBluescript SK-, converted from original cDNA library in Lambda zap about 500,000 P. Gulick P. Gulick
. . . . . . . . .
Triticum aestivum Atlas (Al tolerant) root 8 day old grown in vermiculite with 0.6 mM CaCl2 in water pYES2 (Invitrogen - yeast expression plasmid vector) 8.7x10 ^6 . Marilyn Warburton
Triticum aestivum Bobwhite endosperm mature seed nonstressed and insect-infected (Russian wheat aphid) . . Anna-Maria Botha-Oberholster Anna-Maria Botha-Oberholster
Triticum aestivum Catoctin (USDA-ARS, Beltsville MD) leaf four fully developed leaves after seed germination normal greenhouse conditions pSport-P Primary library 1.12x10^7 cfu/ml J.-J. Lin J.-J. Lin
Triticum aestivum Chinese Spring anther early meiosis . . . . Peter Langridge
Triticum aestivum Chinese Spring root . . . . Dave Lonsdale Paul Bailey
Triticum aestivum Chinese Spring scutelum callus undifferentiated . . . Dave Lonsdale Paul Bailey
Triticum aestivum Chinese Spring spikelet immature, developing . . . Graham Moore Paul Bailey
Triticum aestivum Chinese Spring spikes immature . pT-Adv 100 . Bikram Gill
Triticum aestivum Gamtoos-R (1RL.1BL translocation) leaf & stem 12- to 15-day-old seedlings infected with Russian Wheat Aphid pCMV Sport 6.0 not complete, est. at 3 million . Nora Lapitan,
Dennis Knudson
Triticum aestivum Germplasm line P29 leaf & stem 9-day-old seedlings unstressed Lambda Zap Express 1 million . Joseph M. Anderson
Triticum aestivum Mustang leaf 10-day-old seedlings heat stress Lambda Zap II 2 million Henry Nguyen Henry Nguyen
Triticum aestivum Norin 26 spikelet Feeke's scale 6 field grown . 782,000 fpu Yasunari Ogihara Yasunari Ogihara
Triticum aestivum Novosibirskaya 67, red grain isoline pericarp/testa 3:1 mix, respectively of 10+20 days post anthesis . Lambda Zap II 2 million Paul Bailey, John Flintham Paul Bailey
Triticum aestivum Odeon root seedling unstressed pUC18 819 J.M. Jacquemin J.M. Jacquemin
Triticum aestivum Palmiet leaf 4-leaf stage nonstressed and insect-infected (Russian wheat aphid) . . Anna-Maria Botha-Oberholster Anna-Maria Botha-Oberholster
Triticum aestivum Soleil endosperm 1:1 mix of 10+20 days post anthesis . Lambda Zap II 2 million Kay Denyer Paul Bailey
Triticum aestivum Sumai #3 spikes at anthesis challenged with head blight fungus pGemT 200 . Bikram Gill
Triticum aestivum TAM 101 root 10-day-old seedlings water deficiency stress Lambda Zap II 400,000 Henry Nguyen Henry Nguyen
Triticum aestivum Thatcher Lr1 leaf young leaf 24 h after challenge with LR-AVR1 Lambda Zap 1 million Sylvie Cloutier Sylvie Cloutier
Triticum aestivum Tugela endosperm mature seed nonstressed and insect-infected (Russian wheat aphid) . . Anna-Maria Botha-Oberholster Anna-Maria Botha-Oberholster
Triticum aestivum Wyuna endosperm mid-development . Lambda Zap . . Rudi Appels
Triticum aestivum . embryo . . . . . Mike Holdsworth
Triticum aestivum . endosperm . . . . . Mike Holdsworth
Triticum aestivum . leaf seedling challenged with an avirulent isolate of wheat yellow rust Lambda Zap Express . Lesley Boyd, Rob Koebner Paul Bailey
Triticum turgidum ssp. durum Siliana root 3-day-old seedling drought stress pSPORT1 (BRL) about 50,000 before amplification Philippe Joudrier Philippe Joudrier

*condition- environmental stress, disease challenge, etc.


Proposed Libraries to be Included in the EST Sequencing Project

Please post comments and further cDNA library suggestions to the Project Bulletin Board.


Henry Nguyen

Mark Sorrells and Kay Walker-Simmons

Kay Walker-Simmons
Note: At least some of the following cDNA libraries are suggested to be from a dormant variety such as Clark's Cream.

Perry Gustafson

Shahryar Kianian

Jorge Dubcovsky

Olin Anderson