Library Redundancy

Library Redundancy Level

This table last updated January 07, 2003

% unigenes (within library ) = (# contigs + # unassembled ESTs) / total # ESTs for that library

% library specific ESTs = # library specific ESTs (unassembled ESTs from global phrap assembly) / total # ESTs for that library

Library Name Tissue Total # of ESTs # contigs (within library) # unassembled ESTs (within library) % unigenes (within library) # library specific ESTs % library specific ESTs

TA001E1X endosperm 2728 417 1125 56.5 246 9.0

TA001E1S endosperm subtracted 269 23 218 89.6 43 16.0

TA005E1X dehydrated seeding 795 82 622 88.6 132 16.6

TA006E1X unstressed shoot 2261 375 1224 70.7 322 14.2

TA006E2N normalized shoot 1686 336 268 35.8 43 2.6

TA006E3N normalized shoot 1672 139 1338 88.3 461 27.6

TA007E1X cold stressed seedling 938 107 696 85.6 137 14.6

TA007E3S cold stressed seedling subtracted 1555 203 956 74.5 318 20.5

TA008E1X etiolated root 4017 643 2143 69.4 596 14.8

TA008E3N normalized root 4308 963 1739 62.7 344 8.0

TA009XXX Sumai3 spike 10287 1854 4881 65.5 2050 19.9

TA012XXX ABA treated embryo 2107 264 1491 83.3 509 24.2

TA015E1X heat stressed seedling 821 100 567 81.2 180 21.9

TA016E1X vernalized crown 2286 283 1555 80.4 371 16.2

TA017E1X 20-45 DAP spike 1076 127 422 51.0 80 7.4

TA018E1X 5-15 DAP spike 2860 415 1581 69.8 397 13.9

TA019E1X pre-anthesis spike 11194 1754 5201 62.1 2238 20.0

TA027E1X drought stressed leaf 905 94 635 80.6 188 20.8

TA031E1X heat stressed flag leaf 973 86 710 81.8 193 19.8

TA032E1X heat stressed spike 1012 97 716 80.3 210 20.8

TA036E1X CS drought stressed leaf 641 55 485 84.2 121 18.9

TA037E1X salt stressed sheath 964 123 559 70.7 125 13.0

TA038E1X salt stressed crown 943 75 743 86.7 152 16.1

TA042E1X 3-6 DAP seed * EST data removed due to contamination

TA047E1X wheat root tip 959 125 682 84.2 112 11.7

TA048E1X wheat Al stressed root tip 991 143 646 79.6 143 14.4

TA049E1X dormant embryo 2927 438 1519 66.9 493 16.8

TA055E1X drought stressed root 1310 163 947 84.7 307 23.4

TA056E1X Al stressed root tip 1032 174 657 80.5 133 12.9

TA058E1X root at tiller stage 1025 127 770 87.5 208 20.3

TA059E1X whole grain 3649 624 1451 56.9 368 10.1

TA065E1X salt stressed root 2055 288 1385 81.4 402 19.6

TA066E1X mixed tissue 1404 211 864 76.6 260 18.5

TM011XXX T. monococcum vegetative apex 3031 386 1875 74.6 737 24.3

TM043E1X T. monococcum early reproductive apex 2647 382 1516 71.7 336 12.7

TM046E1X T. monococcum vernalized shoot apex 3363 514 1947 73.2 666 19.8

TT039E1X T. turgidum whole plant 1194 123 765 74.4 175 14.7

SC010XXX rye Al stressed root tip 1198 105 905 84.3 390 32.6

SC013XXX rye control root tip 778 57 649 90.7 289 37.1

SC024E1X rye anther 4631 639 1994 56.9 799 17.3

AS040E1X Ae. speltoides anther 2466 330 1408 70.5 416 16.9

AS067E1X Ae. speltoides anther 1044 134 695 79.4 179 17.1

Total 90958

Library Name	Tissue	Total # of ESTs	# contigs (within library)	# unassembled ESTs (within library)	% unigenes (within library)	# library specific ESTs	% library specific ESTs
TA001E1X	endosperm	2728	417	1125	56.5	246	9.0
TA001E1S	endosperm subtracted	269	23	218	89.6	43	16.0
TA005E1X	dehydrated seeding	795	82	622	88.6	132	16.6
TA006E1X	unstressed shoot	2261	375	1224	70.7	322	14.2
TA006E2N	normalized shoot	1686	336	268	35.8	43	2.6
TA006E3N	normalized shoot	1672	139	1338	88.3	461	27.6
TA007E1X	cold stressed seedling	938	107	696	85.6	137	14.6
TA007E3S	cold stressed seedling subtracted	1555	203	956	74.5	318	20.5
TA008E1X	etiolated root	4017	643	2143	69.4	596	14.8
TA008E3N	normalized root	4308	963	1739	62.7	344	8.0
TA009XXX	Sumai3 spike	10287	1854	4881	65.5	2050	19.9
TA012XXX	ABA treated embryo	2107	264	1491	83.3	509	24.2
TA015E1X	heat stressed seedling	821	100	567	81.2	180	21.9
TA016E1X	vernalized crown	2286	283	1555	80.4	371	16.2
TA017E1X	20-45 DAP spike	1076	127	422	51.0	80	7.4
TA018E1X	5-15 DAP spike	2860	415	1581	69.8	397	13.9
TA019E1X	pre-anthesis spike	11194	1754	5201	62.1	2238	20.0
TA027E1X	drought stressed leaf	905	94	635	80.6	188	20.8
TA031E1X	heat stressed flag leaf	973	86	710	81.8	193	19.8
TA032E1X	heat stressed spike	1012	97	716	80.3	210	20.8
TA036E1X	CS drought stressed leaf	641	55	485	84.2	121	18.9
TA037E1X	salt stressed sheath	964	123	559	70.7	125	13.0
TA038E1X	salt stressed crown	943	75	743	86.7	152	16.1
TA042E1X	3-6 DAP seed	* EST data removed due to contamination
TA047E1X	wheat root tip	959	125	682	84.2	112	11.7
TA048E1X	wheat Al stressed root tip	991	143	646	79.6	143	14.4
TA049E1X	dormant embryo	2927	438	1519	66.9	493	16.8
TA055E1X	drought stressed root	1310	163	947	84.7	307	23.4
TA056E1X	Al stressed root tip	1032	174	657	80.5	133	12.9
TA058E1X	root at tiller stage	1025	127	770	87.5	208	20.3
TA059E1X	whole grain	3649	624	1451	56.9	368	10.1
TA065E1X	salt stressed root	2055	288	1385	81.4	402	19.6
TA066E1X	mixed tissue	1404	211	864	76.6	260	18.5
TM011XXX	T. monococcum vegetative apex	3031	386	1875	74.6	737	24.3
TM043E1X	T. monococcum early reproductive apex	2647	382	1516	71.7	336	12.7
TM046E1X	T. monococcum vernalized shoot apex	3363	514	1947	73.2	666	19.8
TT039E1X	T. turgidum whole plant	1194	123	765	74.4	175	14.7
SC010XXX	rye Al stressed root tip	1198	105	905	84.3	390	32.6
SC013XXX	rye control root tip	778	57	649	90.7	289	37.1
SC024E1X	rye anther	4631	639	1994	56.9	799	17.3
AS040E1X	Ae. speltoides anther	2466	330	1408	70.5	416	16.9
AS067E1X	Ae. speltoides anther	1044	134	695	79.4	179	17.1
Total		90958