Total number of Project cDNA libraries sent to Albany, CA for sequencing is currently at 47, 28
from Tim Close's lab, 8 normalized and subtracted libraries from Henry Nguyen's lab, and 11 others as
contribution to the NSF project.
A list of cDNA libraries generated and to be generated at Tim Close's lab can be found in this table.
For a complete list of Project cDNA libraries and detailed description of each libraries, go to cDNA Libraries.
Progress on Wheat EST Generation
Total number of processed 5' wheat ESTs generated at Albany, CA is shown in the following
table.
EST Source
Number
NSF Wheat EST Project
90,016
USDA ARS Endosperm EST project
5,183
ITEC ESTs
9,647
Total EST Produced in Albany
104,846
Current progress on number of wheat ESTs generated from each cDNA libraries can be found at cDNA libraries page. The average EST read length for each cDNA libraries is shown in the
histogram below.
All the EST data are publicly available and can be accessed and downloaded from Wheat EST data page.
Information on EST assembly is available at Wheat EST
Assembly page. A summarized table with number of contigs and unassembled ESTs within each library, and number of
ESTs unique to each library after global phrap analysis can be found in the Library Redundancy table
Progress on Deletion Mapping
Current progress on deletion mapping can be found in the Mapping
Progress
table. The status of mapping activity in each mapping lab can be accessed here. The thermometer indicator below indicates the total number of
ESTs mapped to date. For detailed information on deletion lines, mapping probes and mapping results, go
to Mapping Data
Progress on Bioinformatics Activity
The activity log of the Project's bioinformatics programmer can be found here.
Wheat EST Database development - Users can choose different query methods to access information
on EST data, their BLAST hits, contig assembly results and deletion mapping data generated in the
project so far.
