Bioinformatics

Tools

• Primer Design Pipeline
• SNP Reporter
• Web-based High-Throughput Primer Design Tool

Primer Design Pipeline

Several Java and Perl programs have been developed. Those programs along with blastn and primer3 programs, as well as rice sequence database compose a pipeline of the conserved primer design.

SNP Reporter:

Software for reporting and verifying discovered SNPs in wheat SNP project

SNP Reporter 3.4 is available for download:

• Windows [No JVM]
• Linux [No JVM]
• Pure Java

High-Throughput Primer Design

Web-based tool to allow multi-sequence primer design using Primer3

• Batch Primer Design Tool