MUSCLE (3.6) multiple sequence alignment


BF429128Tu01P078D05P078D111R1_07      --------------------------------------------------------AAAT
BF429128Tu02P078D05P078D111R1_06      ------------------------------------------------------------
BF429128As02P078D05P078D111R1_09      CTCCGGACCCTCTGAAATTTTTACAATGAACAAGTTGAAAAGCCTTATAATCAAGAAGAT
BF429128As01P078D05P078D111R1_06      --------------------------TGAACAAGTTGGTAAGCATAATAATCAAGAAGAT
                                                                                                  

BF429128Tu01P078D05P078D111R1_07      GCCGCAACAAATTATTTTTATAACACAAAAGTGCTGAACTAACAAAAGCTCTCGAAATTT
BF429128Tu02P078D05P078D111R1_06      ------------------------------------------------------------
BF429128As02P078D05P078D111R1_09      GCAG-AACAAA---TATTTTTAACACAAAACTGCTGAACTAGCAAAAGTTCTTGAAATTC
BF429128As01P078D05P078D111R1_06      GCAG-AACAAA---TATTTTTAACACAAAAGTGCTGAACTAGCAAAAGTTCTTGAAATTC
                                                                                                  

BF429128Tu01P078D05P078D111R1_07      CATTTGTGCA-AGGTGCTTCCATCATAGTCATGTAC-ACAGAGGTAACTGTGTGGCACCC
BF429128Tu02P078D05P078D111R1_06      --TTTGTGCA-AGGTGCTTCCATCATAATCATGTAC-ACAGAGGTAACTGTGTGGCACCC
BF429128As02P078D05P078D111R1_09      CATTTGCGCATAGGTGCTTCCACCATAGTCATGTACTACAGAGGTAAGTATGT-GCACGC
BF429128As01P078D05P078D111R1_06      AATTTGCGCATAGGTGCTTCCACCATAGTCATGTACTACAGAGGTAAGTATGT-GCACGC
                                        **** *** *********** **** ******** ********** * *** **** *

BF429128Tu01P078D05P078D111R1_07      TCAGTATTTTTAAGTCCTGCCACAAGACCCTCTTCCAGGGGCCGATTGTATCTAGATATT
BF429128Tu02P078D05P078D111R1_06      TCAGTATTTTTAAGTCCTGCCACAAGACCCTCTTCCAGGGGCCGATTGTATCTAGATATT
BF429128As02P078D05P078D111R1_09      TCAGTATTTTTAAGTCCTCCCACAAGACCCTCTACC------------------------
BF429128As01P078D05P078D111R1_06      TCAGTATTTTTAAGTCCTCCCACAAGACCCTCTACC------------------------
                                      ****************** ************** **                        

BF429128Tu01P078D05P078D111R1_07      GGAAGCTAGCACGTGGGCCCTCTGCGGGTCAAGTTCTACATCTGGCCCGCTTGCCAGGAC
BF429128Tu02P078D05P078D111R1_06      GGAAGCTAGCACGTGGGCCCTCTGCGGGTCAAGTTCTACATCTGGCCCGCTTGCCAGGAC
BF429128As02P078D05P078D111R1_09      -----------------------GCGGGTTAAGTTCCACATCTGGCCCGCTTGCCAAGGC
BF429128As01P078D05P078D111R1_06      -----------------------GCGGGTTAAGTTCCACATCTGGCCCGCTTGCCAAGGC
                                                             ****** ****** ******************* * *

BF429128Tu01P078D05P078D111R1_07      AAATGGAGCATTGTACTCTAGGCTGTTGGCCTCTTCTCGGGCTTGTAAATAACGTTTTCT
BF429128Tu02P078D05P078D111R1_06      AAATGGAGCATTGTACTCTAGGCTGTTGGCCTCTTCTCGGGCTTGTAAATAACGTTTTCT
BF429128As02P078D05P078D111R1_09      AAATGAAGCATTATACTCTGGGCT------CGCTTCTCAGGCTTGTAAATAACTTC----
BF429128As01P078D05P078D111R1_06      AAATGAAGCATTATACTCTGGGCT------CGCTTCTCAGGCTTGTAAATAACTTC----
                                      ***** ****** ****** ****      * ****** ************** *     

BF429128Tu01P078D05P078D111R1_07      TCTAGCAATGCATCGAGCCGCAAAGCTTTTGTTGGGTAGTGCTTCCCACAAAGTA-TTTG
BF429128Tu02P078D05P078D111R1_06      TCTAGCAATGCATCGAGCCGCAAAGCTTTTGTTGGGTAGTGCTTCCCACAAAGTA-TTTG
BF429128As02P078D05P078D111R1_09      -----CAACGCATCGAGCCGCAAAGCTTTTGTTGGGTAGTGCTTCCCACAAAGTGTTTTG
BF429128As01P078D05P078D111R1_06      -----CAACGCATAGAGCCGCAAAGCTTTTGTTGGGTAGTGCTTCCCACAAAGTGTTTTG
                                           *** **** ****************************************  ****

BF429128Tu01P078D05P078D111R1_07      AACAAAAGATTTTACTTGCATAAGGAAAGGTTACGGGGCACGATGCATCCTAACTGCCTC
BF429128Tu02P078D05P078D111R1_06      AACAAAAGATTTTACTTGCATAAGGAAAGGTTACGGGGCACGATGCATCCTAACTGCCTC
BF429128As02P078D05P078D111R1_09      AACAGATGATTTTACTTGCGTAAGGAAAGGTTACGGGGAACGATGCATCCTAATTGCCTC
BF429128As01P078D05P078D111R1_06      AACAGATGATTTTACTTGCGTAAGGAAAGGTTACGGGGAACGATGCATCCTAATTGCCTC
                                      **** * ************ ****************** ************** ******

BF429128Tu01P078D05P078D111R1_07      AATGGTGAATTAGGATGCGAAGAATATAACATTGGAGTTGAAACCTTATAGGATGGCTGT
BF429128Tu02P078D05P078D111R1_06      AATGGTGAATTAGGATGCGAAGAATATAACATTGGAGTTGAAACCTTATAGGATGGCTGT
BF429128As02P078D05P078D111R1_09      CATGGTGAATTAGGATGCGAAGAATATAACATTGGAGTTGAAACCTTATAAGATGGCTAT
BF429128As01P078D05P078D111R1_06      CATGGTGAATTAGGATGCGAAGAATATAACATTGGAGTTGAAACCTTATAAGATGGCTAT
                                       ************************************************* ******* *

BF429128Tu01P078D05P078D111R1_07      TTGCGTGAACAATCAAAAGTGGGTTCTCCAAATTTCTTCACTCAAATTGGTGTCTCAAGG
BF429128Tu02P078D05P078D111R1_06      TTGCGTGAACAATCAAAAGTGGGTTCTCCAAATTTCTTCACTCAAATTGGTGTCTCAAGG
BF429128As02P078D05P078D111R1_09      TTGCGTGAACAGTCAAAAGGGGGTTCTC--------------CAAATTGGTGTCTCAAGG
BF429128As01P078D05P078D111R1_06      NTGCGTGAACAGTCAAAAGGGGGTTCTC--------------CAAATTGGTGTCTCAAGG
                                       ********** ******* ********              ******************

BF429128Tu01P078D05P078D111R1_07      TG--TTAGGACAAAAAG-------------------------------------------
BF429128Tu02P078D05P078D111R1_06      TG--TTAGGACAAAAAG-------------------------------------------
BF429128As02P078D05P078D111R1_09      TGTTTTGGGACAAAAGGGAAAACTTTGTTTTTGCCACTCCAGCTTTTGCCCACTTTGGAC
BF429128As01P078D05P078D111R1_06      TGTTTTGGGACAAAAGGGAAAACTTTGTTTTTGCCACTCCAGCTTTTGCCCACTTTGGAC
                                      **  ** ******** *                                           

BF429128Tu01P078D05P078D111R1_07      --ATATATACATAACATTGGAGTTGAAACATGATGCAGCTACACTGCATCAACAAGAAAG
BF429128Tu02P078D05P078D111R1_06      --ATATATACATAACATTGGAGTTGAAACATGATGCAGCTACACTGCATCAACAAGAAAG
BF429128As02P078D05P078D111R1_09      AAAAAGATACATAACATTGGAGTTGAAA----ACATAGCTCCACTGCATCAACAAGAAAG
BF429128As01P078D05P078D111R1_06      AAAAAGATACATAACATTGGAGTTGAAA----ACATAGCTCCACTGCATCAACAAGAAAG
                                        * * **********************    *   **** *******************

BF429128Tu01P078D05P078D111R1_07      TAGGATG-----------------------------------------------------
BF429128Tu02P078D05P078D111R1_06      TAGGATGCAAGGAAAATCATAAGATTTTATGTGT--------------------------
BF429128As02P078D05P078D111R1_09      TAGGATGCAAGGAAAATCATAAGATTTTATGTGTCACTGTAGGAACTGGAAGCCTTCTTT
BF429128As01P078D05P078D111R1_06      TAGGATGCAAGGAAAATCA-----------------------------------------
                                      *******                                                     

BF429128Tu01P078D05P078D111R1_07      ------------------------------------------------------------
BF429128Tu02P078D05P078D111R1_06      ------------------------------------------------------------
BF429128As02P078D05P078D111R1_09      CTTTGATATCTTTAGGATTTTATCCCATGCAAGCCAAAAGTTGGACAAGTTTGCAGCTAG
BF429128As01P078D05P078D111R1_06      ------------------------------------------------------------
                                                                                                  

BF429128Tu01P078D05P078D111R1_07      ------------------------------------------------------------
BF429128Tu02P078D05P078D111R1_06      ------------------------------------------------------------
BF429128As02P078D05P078D111R1_09      AAGCTGCCTTGGCAGAAAGAAGAGAAAATGGGTTTCCCGCTAGGACGAAGGACATTTCAT
BF429128As01P078D05P078D111R1_06      ------------------------------------------------------------
                                                                                                  

BF429128Tu01P078D05P078D111R1_07      --------------------
BF429128Tu02P078D05P078D111R1_06      --------------------
BF429128As02P078D05P078D111R1_09      ATGTTAACTACTTGGAAAAA
BF429128As01P078D05P078D111R1_06      --------------------