MUSCLE (3.6) multiple sequence alignment


BF474720Ld08P003D04D10C1      GCTATTTAGGTGACACTATAGAATACTCAAGCTATGCATCCAACGCGTTGGGAGCTCTCC
BF474720Ld03P003D04D10C1      AATTGTAATACGACTCACTATAGGGCGAA----TTGGGCCCGACGTCGCATGCTCCCGGC
BF474720Ld06P003D04D10C1      ------AATACGACTCACTATAGGGCGAA----TTGGGCCCGACGTCGCATGCTCCCGTC
BF474720At01P003D04D10C1      ------------------------------------------------------------
BF474720At02P003D04D10C1      ------------------------------------------------------------
BF474720Tu01P003D04D10C1      ------------------------------------------------------------
BF474720As01P003D04D10C1      ------------------------------------------------------------
                                                                                          

BF474720Ld08P003D04D10C1      CATATGGTCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTCGCTTCCTCTTTCTCGTG
BF474720Ld03P003D04D10C1      CGCCATGGCGGCC-GCGGGAATTC--------------GATTCGCTTCCTCTTTCTCGTG
BF474720Ld06P003D04D10C1      CGCCATGGGGCGCCGCGGGAATTC--------------GATTCGCTTCCTCTTTCTCGTG
BF474720At01P003D04D10C1      ----------------------------------------------------------TG
BF474720At02P003D04D10C1      ---------------------------------------------------------GTG
BF474720Tu01P003D04D10C1      ------------------------------------------------------------
BF474720As01P003D04D10C1      ------------------------------------------------------------
                                                                                          

BF474720Ld08P003D04D10C1      TCAAAAGATCTAGACCAAATGTTCCTCCAGCTTCTCCTGAATCGTCTCTTCGTACAAAAG
BF474720Ld03P003D04D10C1      TCAAAAGACCTAGACCAAATGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTCACAAAAG
BF474720Ld06P003D04D10C1      TCAAAAGACCTAGACCAAATGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTCACAAAAG
BF474720At01P003D04D10C1      TCAAAAGACCTAGACCAAATGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTTACAAAAG
BF474720At02P003D04D10C1      TCAAAAGACCTAGACCAAATGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTTACAAAAG
BF474720Tu01P003D04D10C1      -CAAAAGACCTAGACCAAATGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTTACAAAAG
BF474720As01P003D04D10C1      -CAAAAGACCTAGACCAAATGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTTACAAAAG
                               ******* ********************* ************ *** ***  *******

BF474720Ld08P003D04D10C1      AAGGTGATCA-------TTGTTAGTCTTACTGGAAGCTTGGTGAAAAAATATAGGTTCCA
BF474720Ld03P003D04D10C1      AAGGTAATCATATAAGCTCGTTAGTCTTACTAGAAGCTTGATGAAGAAAATATAATTCCA
BF474720Ld06P003D04D10C1      AAGGTAATCATATAAGCTCGTTAGTCTTACTAGAAGCTTGATGAAGAAAATATAATTCCA
BF474720At01P003D04D10C1      AAGGTAACGATATAAGCTCATTACTCTTACTAGAAGATTGATGAAA-----TAGGTTCCA
BF474720At02P003D04D10C1      AAGGTAACGATATAAGCTCATTACTCTTACTAGAAGATTGATGAAA-----TAGGTTCCA
BF474720Tu01P003D04D10C1      AAGGTAACGATATAAGCTCATTACTCTTACTAGAAGATTGATGAAA-----TAAGTTCCA
BF474720As01P003D04D10C1      AAGGTAACGATATAAGCTCATTACTCTTACTAGAAGATTGATGAAA-----TAGGTTCCA
                              ***** *  *       *  *** ******* **** *** ****          *****

BF474720Ld08P003D04D10C1      TATCTGA--CTATTG-AATGCTGCTGCCATTTGCAGGTGCAACTAAGGCTGATATGGATT
BF474720Ld03P003D04D10C1      AATGTGACGCTCTTGAAATGTTGCTGCCATTTGCAGGTGCAACTAAGATTGATATGGATT
BF474720Ld06P003D04D10C1      AATGTGACGCTCTTGAAATGTTGCTGCCATTTGCAGGTGCAACTAAGATTGATATGGATT
BF474720At01P003D04D10C1      AATGTGACGCTCTTGAAATGTCGCTGCCATTTGCAGGTGCAACTAAGATTGATATGGATT
BF474720At02P003D04D10C1      AATGTGACGCTCTTGAAATGTCGCTGCCATTTACAGGTGCAACTAAGATTGATATGGATT
BF474720Tu01P003D04D10C1      AATGTGACGCTCTTGAAATGTCGCTGCCATTTGCAGTTGCAGCTAAGATTGATATGGATT
BF474720As01P003D04D10C1      AATGTGACGCTCTCGAAATGTCGCTGCCATTTGCAGGTGCAGCTAAGATTGATATGGATT
                               ** ***  ** * * ****  ********** *** **** *****  ***********

BF474720Ld08P003D04D10C1      GTGCTCAAGCACAGC---GAAATCAAAATAACACTGTTTTGCCAGGTCAAGAACA-----
BF474720Ld03P003D04D10C1      CTGCTCAAGCACAACAAAGAAATCAAAATAACATGGTCTTGCAAGGTCAAGAGCACATGA
BF474720Ld06P003D04D10C1      CTGCTCAAGCACAACAAAGAAATCAAAATAACATGGTCTTGCAAGGTCAAGAGCACATGA
BF474720At01P003D04D10C1      CTGCTCAAGCACAACAAAGAAATCAAAATAGCATGGTCTTGCAAGGTCAAGAGCATATGA
BF474720At02P003D04D10C1      CTGCTCAAGCACAACAAAGAAATCAAAATAGCATGGTCTTGCAAGGTCAAGAGCATATGA
BF474720Tu01P003D04D10C1      CTGCTCAAGCACAACAAAGAAATCAAAATAACATGGTCTTGCAAGGTCAAGAGCACATGA
BF474720As01P003D04D10C1      CTGCTCAAGCACAACAAAGAAATCAAAATAACATGGTCTTGCAAGGTCAAGAGCACATGA
                               ************ *   ************ **  ** **** ********* **     

BF474720Ld08P003D04D10C1      ----GAGGAGCAATAAGCTAACCGACATTAATGACTTTGATGCCACTGTTCAGAAGCCTA
BF474720Ld03P003D04D10C1      CCTTGAGGACCAACAACCTGACTGCCAGCAATGACTCTGATGCTACTGTTCAGAAGCCTA
BF474720Ld06P003D04D10C1      CCTTGAGGACCAACAACCTGACTGCCAGCAATGACTCTGATGCTACTGTTCAGAAGCCTA
BF474720At01P003D04D10C1      CCTTGAGGACCAACAACCTTACTGGCAGCAATGAATCTGATGCTACTGTTCAGAAGCCTA
BF474720At02P003D04D10C1      CCTTGAGGACCAACAACCTTACTGGCAGCAATGAATCTGATGCTACTGTTCAGAAGCCTA
BF474720Tu01P003D04D10C1      CCTTGAGGACCAACAACCTGACTGCCAGCAATGAATCTGATGCTACCGTTCAGAAGCCTA
BF474720As01P003D04D10C1      CCTTGAGGACCAACAACCTGACTGCCAGCAATGAATCTGATGCTACTGTTCAGAAGCCTA
                                  ***** *** ** ** ** * **  ***** * ****** ** *************

BF474720Ld08P003D04D10C1      TGATGTGGTCACCACCACCACCCAACATTGGAAAAACCAACCCACTAACGTTTCAGCAGA
BF474720Ld03P003D04D10C1      TGATGTGGT---CTCCATCCCCCAACATCGGAAAAAACCATGCATCCGCGTTTCAGCAGA
BF474720Ld06P003D04D10C1      TGATGTGGT---CTCCATCCCCCAACATCGGAAAAAACCATGCATCCGCGTTTCAGCAGA
BF474720At01P003D04D10C1      TGATGTGGT---CTCCATCCCCCAACATTGGAAAAAACCATGCATCCGCGTTTCAGCAGA
BF474720At02P003D04D10C1      TGATGTGGT---CTCCATCCCCCAACATTGGAAAAAACCATGCATCCGCGTTTCAGCAGA
BF474720Tu01P003D04D10C1      TGATGTGGT---CTCCATCCCCCAACATCGGAAAAAACCATGCATCCGCGTTTCAGCAGA
BF474720As01P003D04D10C1      TGATGTGGT---CTCCATCCCCCAACATCGGAAAAAACCATGCATCCGCGTTTCAGCAGA
                              *********   * *** * ******** ******* * *  **    ************

BF474720Ld08P003D04D10C1      GGCCCTCCGTGCATAATTCGATTCAGTTGGGAAGGCGTGAAACTGACTTCAAGGATGCCA
BF474720Ld03P003D04D10C1      GGCCCTCTATGGATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTA
BF474720Ld06P003D04D10C1      GGCCCTCTATGGATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTA
BF474720At01P003D04D10C1      GGCCCTCTATGGATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTA
BF474720At02P003D04D10C1      GGCCCTCTATGGATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTA
BF474720Tu01P003D04D10C1      GGCCCTCTATGGATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTA
BF474720As01P003D04D10C1      GGCCCTCTATGGATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTA
                              *******  ** ****** *** *** *******  **               ***** *

BF474720Ld08P003D04D10C1      GTTCTGGTGCTCAACCTTTTGGTGATTCCCTAGGCTTCTTCATGCAGACAACCTTTGATG
BF474720Ld03P003D04D10C1      GTTCTGGTGCTCAATCTTTTGGTGATTCCCAGGGCTTCTTCATGCAG---ACCTTTGATG
BF474720Ld06P003D04D10C1      GTTCTGGTGCTCAATCTTTTGGTGATTCCCAGGGCTTCTTCATGCAG---ACCTTTGATG
BF474720At01P003D04D10C1      GTTCTGGTGCTCAATCTTTTGGTGATTCCCAAGGCTTCTTCATGCAG---ACCTTTGATG
BF474720At02P003D04D10C1      GTTCTGGTGCTCAATCTTTTGGTGATTCCCAAGGCTTCTTCATGCAG---ACCTTTGATG
BF474720Tu01P003D04D10C1      GTTCTGGTGCTCAATCTTTTGGTGATTCCCAAGGCTTCTTCATGCAG---ACCTTTGATG
BF474720As01P003D04D10C1      GTTCTGGTGTTCAATCTTTTGGTGATTCCCAAGGCTTCTTCATGCAG---ACCTTTGATG
                              ********* **** ***************  ***************   **********

BF474720Ld08P003D04D10C1      AGGCTCCAAATCGTCTTGGTTCATTCAAGAACCAGTTTCAGGATCACAGTTATGCTCGTC
BF474720Ld03P003D04D10C1      AGGCTCCTAATCGTCATGGCTCATTCACGAACCAGTTCCAGGATCACAGTTCTGCTCGTC
BF474720Ld06P003D04D10C1      AGGCTCCTAATCGTCATGGCTCATTCAAGAACCAGTTCCAGGATCACAGTTCTGCTCGTC
BF474720At01P003D04D10C1      AGGCTCCTAATCGTCATGGCTCATTCAAGAACCAGTTCCAGGATCACAGTTCTGCT----
BF474720At02P003D04D10C1      AGGCTCCTAATCGTCATGGCTCATTCAAGAACCAGTTCCAGGATCACAGTTCTGCT----
BF474720Tu01P003D04D10C1      AGGCTCCTAACCGTCATGGCTCATTCAAGAACCAGTTCCAGGATCACAGTTCTGC-----
BF474720As01P003D04D10C1      AGGCTCCTAACCGTCATGGCTCATTCAAGAACCAGTTCCAGGATCACAGTTCTGCT----
                              ******* ** **** *** ******* ********* ************* ***     

BF474720Ld08P003D04D10C1      ACTTCTCAGACCCAATC----GAATTCCCGCGGCCGCCATGGCGGCCGGGAGCATGCGA-
BF474720Ld03P003D04D10C1      ACTTCTCAGACCCAATCACTAGGGAATTCGCGGCCGCC-TGCAGGTCGACCATATGGGAG
BF474720Ld06P003D04D10C1      ACTTCTCAGACCCAATCACTAGTGAATTCGCGGCCGCC-TGCAGGTCGACCATATGGGAG
BF474720At01P003D04D10C1      ------------------------------------------------------------
BF474720At02P003D04D10C1      ------------------------------------------------------------
BF474720Tu01P003D04D10C1      ------------------------------------------------------------
BF474720As01P003D04D10C1      ------------------------------------------------------------
                                                                                          

BF474720Ld08P003D04D10C1      -----------CGTCGGGCCCAATTCGCCCTATAGTGAGTCGTATT--------------
BF474720Ld03P003D04D10C1      AGCTCCCAACGCGTTGGGATGCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTG
BF474720Ld06P003D04D10C1      AGCTCCCAACGCGTTGGATGC-ATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTG
BF474720At01P003D04D10C1      ------------------------------------------------------------
BF474720At02P003D04D10C1      ------------------------------------------------------------
BF474720Tu01P003D04D10C1      ------------------------------------------------------------
BF474720As01P003D04D10C1      ------------------------------------------------------------
                                                                                          

BF474720Ld08P003D04D10C1      ---------
BF474720Ld03P003D04D10C1      GCGTAATCG
BF474720Ld06P003D04D10C1      GCGTAA---
BF474720At01P003D04D10C1      ---------
BF474720At02P003D04D10C1      ---------
BF474720Tu01P003D04D10C1      ---------
BF474720As01P003D04D10C1      ---------