MUSCLE (3.6) multiple sequence alignment


BF474720Ld10P003D04D10F1_079.ab1      --------------TCCGA-----CCTGGGC--TCCACCCTTTCAA--------------
BF474720Ld08P003D04D10F1_063.ab1      --------TGTTCCTCCAGCTTCTCCTGAATCGTCTCTTCGTACAAAAGAAGGTGATCA-
BF474720Ld03P003D04D10F1_027.ab1      -------------------TTTCTCCTGAAT-ATCTGTTCTCACAAAAGAAGGTAATCAT
BF474720Ld06P003D04D10F1_047.ab1      --------TGTTCCTCCAGTTTCTCCTGAAT-ATCTGTTCTCACAAAAGAAGGTAATCAT
BF474720At01P003D04D10F1_083.ab1      --------TGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTTACAAAAGAAGGTAACGAT
BF474720At02P003D04D10F1_087.ab1      --------TGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTTACAAAAGAAGGTAACGAT
BF474720Tu01P003D04D10F1_067.ab1      TAGACAAATGTTCCTCCAGTTTCTCCTGAATCATCTGTTCTTACAAAAGAAGGTAACGAT
BF474720As01P003D04D10F1_071.ab1      --------TGTTCCTCCAGTTTCTCCTGAAC-ATCTGTTCTTACAAAAGAAGGTAACGAT
                                                              ****     **    *   ***              

BF474720Ld10P003D04D10F1_079.ab1      -----CTCGTCCGGCTGGCT------------------------------------CGCT
BF474720Ld08P003D04D10F1_063.ab1      ------TTGTTAGTCTTACTGGAAGCTTGGTGAAAAAATATAGGTTCCATATCTGA--CT
BF474720Ld03P003D04D10F1_027.ab1      ATAAGCTCGTTAGTCTTACTAGAAGCTTGATGAAGAAAATATAATTCCAAATGTGACGCT
BF474720Ld06P003D04D10F1_047.ab1      ATAAGCTCGTTAGTCTTACTAGAAGCTTGATGAAGAAAATATAATTCCAAATGTGACGCT
BF474720At01P003D04D10F1_083.ab1      ATAAGCTCATTACTCTTACTAGAAGATTGATGAAA-----TAGGTTCCAAATGTGACGCT
BF474720At02P003D04D10F1_087.ab1      ATAAGCTCATTACTCTTACTAGAAGATTGATGAAA-----TAGGTTCCAAATGTGACGCT
BF474720Tu01P003D04D10F1_067.ab1      ATAAGCTCATTACTCTTACTAGAAGATTGATGAAA-----TAAGTTCCAAATGTGACGCT
BF474720As01P003D04D10F1_071.ab1      ATAAGCTCATTACTCTTACTAGAAGATTGATGAAA-----TAGGTTCCAAATGTGACGCT
                                            *  *    **  **                                      **

BF474720Ld10P003D04D10F1_079.ab1      CTCG------------------------------AGCTCGGCGTGATCGTCGCGCAGATG
BF474720Ld08P003D04D10F1_063.ab1      ATTG-AATGCTGCTGCCATTTGCAGGTGCAACTAAGGCTGATATGGATTGTGCTCAAGCA
BF474720Ld03P003D04D10F1_027.ab1      CTTGAAATGTTGCTGCCATTTGCAGGTGCAACTAAGATTGATATGGATTCTGCTCAAGCA
BF474720Ld06P003D04D10F1_047.ab1      CTTGAAATGTTGCTGCCATTTGCAGGTGCAACTAAGATTGATATGGATTCTGCTCAAGCA
BF474720At01P003D04D10F1_083.ab1      CTTGAAATGTCGCTGCCATTTGCAGGTGCAACTAAGATTGATATGGATTCTGCTCAAGCA
BF474720At02P003D04D10F1_087.ab1      CTTGAAATGTCGCTGCCATTTACAGGTGCAACTAAGATTGATATGGATTCTGCTCAAGCA
BF474720Tu01P003D04D10F1_067.ab1      CTTGAAATGTCGCTGCCATTTGCAGTTGCAGCTAAGATTGATATGGATTCTGCTCAAGCA
BF474720As01P003D04D10F1_071.ab1      CTCGAAATGTCGCTGCCATTTGCAGGTGCAGCTAAGATTGATATGGATTCTGCTCAAGCA
                                       * *                              **   *   **      ** **    

BF474720Ld10P003D04D10F1_079.ab1      -------GTCATCAC-----CATGGGC-------GTCGTGGCCACCTCCCCCAAGG----
BF474720Ld08P003D04D10F1_063.ab1      CAGC---GAAATCAAAATAACACTGTTTTGCCAGGTCAAGAACA---------GAGGAGC
BF474720Ld03P003D04D10F1_027.ab1      CAACAAAGAAATCAAAATAACATGGTCTTGCAAGGTCAAGAGCACATGACCTTGAGGACC
BF474720Ld06P003D04D10F1_047.ab1      CAACAAAGAAATCAAAATAACATGGTCTTGCAAGGTCAAGAGCACATGACCTTGAGGACC
BF474720At01P003D04D10F1_083.ab1      CAACAAAGAAATCAAAATAGCATGGTCTTGCAAGGTCAAGAGCATATGACCTTGAGGACC
BF474720At02P003D04D10F1_087.ab1      CAACAAAGAAATCAAAATAGCATGGTCTTGCAAGGTCAAGAGCATATGACCTTGAGGACC
BF474720Tu01P003D04D10F1_067.ab1      CAACAAAGAAATCAAAATAACATGGTCTTGCAAGGTCAAGAGCACATGACCTTGAGGACC
BF474720As01P003D04D10F1_071.ab1      CAACAAAGAAATCAAAATAACATGGTCTTGCAAGGTCAAGAGCACATGACCTTGAGGACC
                                             *  ****      **  *         ***  *  **           *    

BF474720Ld10P003D04D10F1_079.ab1      AACGCCCCGCGTGGCCGCTTCGGCTCTGGGTCTGCGCGTACAACGTCGGCAACGTGCTCA
BF474720Ld08P003D04D10F1_063.ab1      AATAAGCTAACCGACATTAATGACTTTGATGCCACTGTTCAGAAGCCTATGATGTGGTCA
BF474720Ld03P003D04D10F1_027.ab1      AACAACCTGACTGCCAGCAATGACTCTGATGCTACTGTTCAGAAGCCTATGATGTGGTCT
BF474720Ld06P003D04D10F1_047.ab1      AACAACCTGACTGCCAGCAATGACTCTGATGCTACTGTTCAGAAGCCTATGATGTGGTCT
BF474720At01P003D04D10F1_083.ab1      AACAACCTTACTGGCAGCAATGAATCTGATGCTACTGTTCAGAAGCCTATGATGTGGTCT
BF474720At02P003D04D10F1_087.ab1      AACAACCTTACTGGCAGCAATGAATCTGATGCTACTGTTCAGAAGCCTATGATGTGGTCT
BF474720Tu01P003D04D10F1_067.ab1      AACAACCTGACTGCCAGCAATGAATCTGATGCTACCGTTCAGAAGCCTATGATGTGGTCT
BF474720As01P003D04D10F1_071.ab1      AACAACCTGACTGCCAGCAATGAATCTGATGCTACTGTTCAGAAGCCTATGATGTGGTCT
                                      **    *     * *      *  * **   *  *   *   * * *    * *** ** 

BF474720Ld10P003D04D10F1_079.ab1      GCCTCCCACTCCTCTACTGGCGCCACCGACA---------TTCATCGGCCGCC------G
BF474720Ld08P003D04D10F1_063.ab1      CCACCACCACCCAACATTGGAAAAACCAACCCACTAACGTTTCAGCAGAGGCCCTCCGTG
BF474720Ld03P003D04D10F1_027.ab1      CCATCCC---CCAACATCGGAAAAAACCATGCATCCGCGTTTCAGCAGAGGCCCTCTATG
BF474720Ld06P003D04D10F1_047.ab1      CCATCCC---CCAACATCGGAAAAAACCATGCATCCGCGTTTCAGCAGAGGCCCTCTATG
BF474720At01P003D04D10F1_083.ab1      CCATCCC---CCAACATTGGAAAAAACCATGCATCCGCGTTTCAGCAGAGGCCCTCTATG
BF474720At02P003D04D10F1_087.ab1      CCATCCC---CCAACATTGGAAAAAACCATGCATCCGCGTTTCAGCAGAGGCCCTCTATG
BF474720Tu01P003D04D10F1_067.ab1      CCATCCC---CCAACATCGGAAAAAACCATGCATCCGCGTTTCAGCAGAGGCCCTCTATG
BF474720As01P003D04D10F1_071.ab1      CCATCCC---CCAACATCGGAAAAAACCATGCATCCGCGTTTCAGCAGAGGCCCTCTATG
                                       *  * *   **   *  **    * * *           **** * *  ***      *

BF474720Ld10P003D04D10F1_079.ab1      GGCGAGGCGACGACCCCG---AGATGC-------------ACGGCGCCGGTGACGCTCTA
BF474720Ld08P003D04D10F1_063.ab1      CATAATTCGATTCAGTTGGGAAGGCGTGAAACTGACTTCAAGGATGCCAGT-----TCTG
BF474720Ld03P003D04D10F1_027.ab1      GATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTAGT-----TCTG
BF474720Ld06P003D04D10F1_047.ab1      GATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTAGT-----TCTG
BF474720At01P003D04D10F1_083.ab1      GATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTAGT-----TCTG
BF474720At02P003D04D10F1_087.ab1      GATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTAGT-----TCTG
BF474720Tu01P003D04D10F1_067.ab1      GATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTAGT-----TCTG
BF474720As01P003D04D10F1_071.ab1      GATAATTGGATGCAGCTGGGAAGATGT---------------GATGCTAGT-----TCTG
                                          *   **       *   **  *                *  **  **     *** 

BF474720Ld10P003D04D10F1_079.ab1      AGGTTCAAGCT-----TGATACCTTAATGTTGTGCAGAACGTACAA---ATTTAACATTA
BF474720Ld08P003D04D10F1_063.ab1      GTGCTCAACCTTTTGGTGATTCCCTAGGCTTCTTCA-----TGCAGACAACCTTTGATGA
BF474720Ld03P003D04D10F1_027.ab1      GTGCTCAATCTTTTGGTGATTCCCAGGGCTTCTTCA-----TGCAG---ACCTTTGATGA
BF474720Ld06P003D04D10F1_047.ab1      GTGCTCAATCTTTTGGTGATTCCCAGGGCTTCTTCA-----TGCAG---ACCTTTGATGA
BF474720At01P003D04D10F1_083.ab1      GTGCTCAATCTTTTGGTGATTCCCAAGGCTTCTTCA-----TGCAG---ACCTTTGATGA
BF474720At02P003D04D10F1_087.ab1      GTGCTCAATCTTTTGGTGATTCCCAAGGCTTCTTCA-----TGCAG---ACCTTTGATGA
BF474720Tu01P003D04D10F1_067.ab1      GTGCTCAATCTTTTGGTGATTCCCAAGGCTTCTTCA-----TGCAG---ACCTTTGATGA
BF474720As01P003D04D10F1_071.ab1      GTGTTCAATCTTTTGGTGATTCCCAAGGCTTCTTCA-----TGCAG---ACCTTTGATGA
                                        * **** **     **** **      ** * **     * **    *  *   ** *

BF474720Ld10P003D04D10F1_079.ab1      CATGCTTAAGCTTCTTGACGAAATTCTTTGTGTACTAATTTCAGGA--ACAGCTCGTATC
BF474720Ld08P003D04D10F1_063.ab1      GGCTCCAAATCGTCTTGGT----TCATTCAAGAACCAGTTTCAGGATCACAGTTA-----
BF474720Ld03P003D04D10F1_027.ab1      GGCTCCTAATCGTCATGGC----TCATTCACGAACCAGTTCCAGGATCACAGTTC-----
BF474720Ld06P003D04D10F1_047.ab1      GGCTCCTAATCGTCATGGC----TCATTCAAGAACCAGTTCCAGGATCACAGTTC-----
BF474720At01P003D04D10F1_083.ab1      GGCTCCTAATCGTCATGGC----TCATTCAAGAACCAGTTCCAGGATCACAGTTC-----
BF474720At02P003D04D10F1_087.ab1      GGCTCCTAATCGTCATGGC----TCATTCAAGAACCAGTTCCAGGATCACAGTTC-----
BF474720Tu01P003D04D10F1_067.ab1      GGCTCCTAACCGTCATGGC----TCATTCAAGAACCAGTTCCAGGATCACAGTTC-----
BF474720As01P003D04D10F1_071.ab1      GGCTCCTAACCGTCATGGC----TCATTCAAGAACCAGTTCCAGGATCACAGTTC-----
                                          *  ** * ** **      *  **   * ** * ** *****  **** *      

BF474720Ld10P003D04D10F1_079.ab1      TGATGAACAAGGCTCGGGCGTTCCTGGAGCTCTTCTTCGCGATGTGGTTAATCACTAGTG
BF474720Ld08P003D04D10F1_063.ab1      ----------TGCTCGTCACTTCTCAGACC----------------------CAATCGAA
BF474720Ld03P003D04D10F1_027.ab1      ----------TGCTCGTCACTTCTCAGACC------------------CAATCACTAGGG
BF474720Ld06P003D04D10F1_047.ab1      ----------TGCTCGTCACTTCTCAGACC------------------CAATCACTAGTG
BF474720At01P003D04D10F1_083.ab1      ----------TGCT----------------------------------------------
BF474720At02P003D04D10F1_087.ab1      ----------TGCT----------------------------------------------
BF474720Tu01P003D04D10F1_067.ab1      ----------TGC-----------------------------------------------
BF474720As01P003D04D10F1_071.ab1      ----------TGCT----------------------------------------------
                                                 **                                               

BF474720Ld10P003D04D10F1_079.ab1      AATTCGCGGCCGCCTGCAGGTC---GACCATATGGGAGAGCTCCCAACGCGTT-GGATGC
BF474720Ld08P003D04D10F1_063.ab1      TTCCCGCGGCCGCCATGGCGGCCGGGAGCATGCGACGTCGGGCCCAATTCGCC-------
BF474720Ld03P003D04D10F1_027.ab1      AATTCGCGGCCGCCTGCAGGTC---GACCATATGGGAGAGCTCCCAACGCGTTGGGATGC
BF474720Ld06P003D04D10F1_047.ab1      AATTCGCGGCCGCCTGCAGGTC---GACCATATGGGAGAGCTCCCAACGCGTT-GGATGC
BF474720At01P003D04D10F1_083.ab1      ------------------------------------------------------------
BF474720At02P003D04D10F1_087.ab1      ------------------------------------------------------------
BF474720Tu01P003D04D10F1_067.ab1      ------------------------------------------------------------
BF474720As01P003D04D10F1_071.ab1      ------------------------------------------------------------
                                                                                                  

BF474720Ld10P003D04D10F1_079.ab1      ATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATGGTC
BF474720Ld08P003D04D10F1_063.ab1      --------------CTATAGTGAGTCGTATT---------------------
BF474720Ld03P003D04D10F1_027.ab1      ATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCG-----
BF474720Ld06P003D04D10F1_047.ab1      ATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAA--------
BF474720At01P003D04D10F1_083.ab1      ----------------------------------------------------
BF474720At02P003D04D10F1_087.ab1      ----------------------------------------------------
BF474720Tu01P003D04D10F1_067.ab1      ----------------------------------------------------
BF474720As01P003D04D10F1_071.ab1      ----------------------------------------------------