MUSCLE (3.6) multiple sequence alignment


BF474720Ld01P003D04D10R1_011.ab1      ---------------ATATGTGCCAAGTGAACAAGATACTTGACCGA--------TTCAT
BF474720Ld09P003D04D10R1_075.ab1      ------------AGTATATGTGCCAAGTGAACAAGATACTTGACCGA--------TTCAT
BF474720Ld03P003D04D10R1_027.ab1      ------------------TGAGCCATGACGATTAGGAGCCTCATCAAAG---GTCTGCAT
BF474720Ld06P003D04D10R1_047.ab1      --------GGTTCTTGAATGAGCCATGACGATTAGGAGCCTCATCAAAG---GTCTGCAT
BF474720At01P003D04D10R1_083.ab1      ----------TTCTTGAATGAACCATGACGATTAGGAGCCTCATCAAAG---GTCTGCAT
BF474720At02P003D04D10R1_087.ab1      -------------------------TGACGATTAGGAGCCTCATCAAAG---GTCTGCAT
BF474720Tu01P003D04D10R1_067.ab1      --------TGGTTCTTGCAGAGCCATGACGGTTAGGAGCCTCATCAAAG---GTCTGCAT
BF474720As01P003D04D10R1_071.ab1      CTGGCACTGGTTCTTGAATGAGCCATGACGGTTAGGAGCCTCATCAAAG---GTCTGCAT
BF474720Ld05P003D04D10R1_043.ab1      ------------------TGAACCAAGACGATTTGGAGCCTCATCAAAGGTTGTCTGCAT
BF474720Ld08P003D04D10R1_063.ab1      ------------------TGAACCAAGACGATTTGGAGCCTCATCAAAGGTTGTCTGCAT
                                                                *       *   * * * * *        * ***

BF474720Ld01P003D04D10R1_011.ab1      TCGGATGCCTT---CATCAGGCTAAACGGCTATGTCATGGACAAGACA------------
BF474720Ld09P003D04D10R1_075.ab1      TCGGATGCCTT---CATCAGGCTAAACGGCTATGTCATGGACAAGACA------------
BF474720Ld03P003D04D10R1_027.ab1      GAAGAAGCCCTGGGAATCA--CCAAAAGATTGAGCACCAGAACTAGCA------------
BF474720Ld06P003D04D10R1_047.ab1      GAAGAAGCCCTGGGAATCA--CCAAAAGATTGAGCACCAGAACTAGCA------------
BF474720At01P003D04D10R1_083.ab1      GAAGAAGCCTTGGGAATCA--CCAAAAGATTGAGCACCAGAACTAGCA------------
BF474720At02P003D04D10R1_087.ab1      GAAGAAGCCTTGGGAATCA--CCAAAAGATTGAGCACCAGAACTAGCA------------
BF474720Tu01P003D04D10R1_067.ab1      GAAGAAGCCTTGGGAATCA--CCAAAAGATTGAGCACCAGAACTAGCA------------
BF474720As01P003D04D10R1_071.ab1      GAAGAAGCCTTGGGAATCA--CCAAAAGATTGAACACCAGAACTAGCA------------
BF474720Ld05P003D04D10R1_043.ab1      GAAGAAGCCTAGGGAATCA--CCAAAAGGTTGAGCACCAGAACTGGCATCCTTGAAGTCA
BF474720Ld08P003D04D10R1_063.ab1      GAAGAAGCCTAGGGAATCA--CCAAAAGGTTGAGCACCAGAACTGGCATCCTTGAAGTCA
                                         ** ***      ****  * *** *  *        **     **            

BF474720Ld01P003D04D10R1_011.ab1      ---------------AAATG-------------GTAAAGTCCCTTGAATGAAATAC----
BF474720Ld09P003D04D10R1_075.ab1      ---------------AAATG-------------GTAAAGTCCCTTGAATGAAATAC----
BF474720Ld03P003D04D10R1_027.ab1      ---TCACATCTTCCCAGCTGCATCCAATTATCCATAGAGGGCCTCTGCTGAAACGCGGAT
BF474720Ld06P003D04D10R1_047.ab1      ---TCACATCTTCCCAGCTGCATCCAATTATCCATAGAGGGCCTCTGCTGAAACGCGGAT
BF474720At01P003D04D10R1_083.ab1      ---TCACATCTTCCCAGCTGCATCCAATTATCCATAGAGGGCCTCTGCTGAAACGCGGAT
BF474720At02P003D04D10R1_087.ab1      ---TCACATCTTCCCAGCTGCATCCAATTATCCATAGAGGGCCTCTGCTGAAACGCGGAT
BF474720Tu01P003D04D10R1_067.ab1      ---TCACATCTTCCCAGCTGCATCCAATTATCCATAGAGGGCCTCTGCTGAAACGCGGAT
BF474720As01P003D04D10R1_071.ab1      ---TCACATCTTCCCAGCTGCATCCAATTATCCATAGAGGGCCTCTGCTGAAACGCGGAT
BF474720Ld05P003D04D10R1_043.ab1      GTTTCACGCCTTCCCAACTGAATCGAATTATGCACGGAGGGCCTCTGCTGAAACGTTAGT
BF474720Ld08P003D04D10R1_063.ab1      GTTTCACGCCTTCCCAACTGAATCGAATTATGCACGGAGGGCCTCTGCTGAAACGTTAGT
                                                     *  **                 **  ***    *****       

BF474720Ld01P003D04D10R1_011.ab1      -------------------------------GTAATCACTCGATAAGGCCAGTCGCGAGC
BF474720Ld09P003D04D10R1_075.ab1      -------------------------------GTAATCACTCGATAAGGCCAGTCGCGAGC
BF474720Ld03P003D04D10R1_027.ab1      GCATGGTTTTTTCCGATGTTG---GGGGATGGAGACCACATCAT-AGGCTTCTGAACAGT
BF474720Ld06P003D04D10R1_047.ab1      GCATGGTTTTTTCCGATGTTG---GGGGATGGAGACCACATCAT-AGGCTTCTGAACAGT
BF474720At01P003D04D10R1_083.ab1      GCATGGTTTTTTCCAATGTTG---GGGGATGGAGACCACATCAT-AGGCTTCTGAACAGT
BF474720At02P003D04D10R1_087.ab1      GCATGGTTTTTTCCAATGTTG---GGGGATGGAGACCACATCAT-AGGCTTCTGAACAGT
BF474720Tu01P003D04D10R1_067.ab1      GCATGGTTTTTTCCGATGTTG---GGGGATGGAGACCACATCAT-AGGCTTCTGAACGGT
BF474720As01P003D04D10R1_071.ab1      GCATGGTTTTTTCCGATGTTG---GGGGATGGAGACCACATCAT-AGGCTTCTGAACAGT
BF474720Ld05P003D04D10R1_043.ab1      GGGTTGGTTTTTCCAATGTTGGGTGGTGGTGGTGACCACATCAT-AGGCTTCTGAA----
BF474720Ld08P003D04D10R1_063.ab1      GGGTTGGTTTTTCCAATGTTGGGTGGTGGTGGTGACCACATCAT-AGGCTTCTGAACAGT
                                                                     *  * ***   ** ****   *       

BF474720Ld01P003D04D10R1_011.ab1      ACAGTCAAAACTATTTGAGGCAATCGAATT------------------------------
BF474720Ld09P003D04D10R1_075.ab1      ACAGTCAAAACTATTTGAGGCAATCGAATT------------------------------
BF474720Ld03P003D04D10R1_027.ab1      AGCATCAGAGTCATTGCTGGCAGTCAGGTTGTTGGTCCTCAAGGTCATGTGCTCTTGACC
BF474720Ld06P003D04D10R1_047.ab1      AGCATCAGAGTCATTGCTGGCAGTCAGGTTGTTGGTCCTCAAGGTCATGTGCTCTTGACC
BF474720At01P003D04D10R1_083.ab1      AGCATCAGATTCATTGCTGCCAGTAAGGTTGTTGGTCCTCAAGGTCATATGCTCTTGACC
BF474720At02P003D04D10R1_087.ab1      AGCATCAGATTCATTGCTGCCAGTAAGGTTGTTGGTCCTCAAGGTCATATGCTCTTGACC
BF474720Tu01P003D04D10R1_067.ab1      AGCATCAGATTCATTGCTGGCAGTCAGGTTGTTGGTCCTCAAGGTCATGTGCTCTTGACC
BF474720As01P003D04D10R1_071.ab1      AGCATCAGATTCATTGCTGGCAGTCAGGTTGTTGGTCCTCAAGGTCATGTGCTCTTGACC
BF474720Ld05P003D04D10R1_043.ab1      -----------------------TCGAATT------------------------------
BF474720Ld08P003D04D10R1_063.ab1      GGCATCAAAGTCATTAATGTCGGTTAGCTTATTGCTCCTC---------TGTTCTTGACC
                                                             *    **                              

BF474720Ld01P003D04D10R1_011.ab1      ----------------------------------------------CCCGCGGCCGCCAT
BF474720Ld09P003D04D10R1_075.ab1      ----------------------------------------------CCCGCGGCCGCCAT
BF474720Ld03P003D04D10R1_027.ab1      TTGCAAGACCATGTTATTTTGATTTCTTTGTTGTGCTTGAGCAGAATCCATATCAATCTT
BF474720Ld06P003D04D10R1_047.ab1      TTGCAAGACCATGTTATTTTGATTTCTTTGTTGTGCTTGAGCAGAATCCATATCAATCTT
BF474720At01P003D04D10R1_083.ab1      TTGCAAGACCATGCTATTTTGATTTCTTTGTTGTGCTTGAGCAGAATCCATATCAATCTT
BF474720At02P003D04D10R1_087.ab1      TTGCAAGACCATGCTATTTTGATTTCTTTGTTGTGCTTGAGCAGAATCCATATCAATCTT
BF474720Tu01P003D04D10R1_067.ab1      TTGCAAGACCATGTTATTTTGATTTCTTTGTTGTGCTTGAGCAGAATCCATATCAATCTT
BF474720As01P003D04D10R1_071.ab1      TTGCAAGACCATGTTATTTTGATTTCTTTGTTGTGCTTGAGCAGAATCCATATCAATCTT
BF474720Ld05P003D04D10R1_043.ab1      ----------------------------------------------CCCGCGGCCGCCAT
BF474720Ld08P003D04D10R1_063.ab1      TGGCAAAACAGTGTTATTTTGATTTC---GCTGTGCTTGAGCACAATCCATATCAGCCTT
                                                                                     **    *   * *

BF474720Ld01P003D04D10R1_011.ab1      GGCGGC------------CGGGAGCATGC-----------GACGTCGGGCCCA-------
BF474720Ld09P003D04D10R1_075.ab1      GGCGGC------------CGGGAGCATGC-----------GACGTCGGGCCCA-------
BF474720Ld03P003D04D10R1_027.ab1      AGTTGCACCTGCAAATGGCAGCAACATTTCAAGAGCGTCACATTTGGAATTATATTTTCT
BF474720Ld06P003D04D10R1_047.ab1      AGTTGCACCTGCAAATGGCAGCAACATTTCAAGAGCGTCACATTTGGAATTATATTTTCT
BF474720At01P003D04D10R1_083.ab1      AGTTGCACCTGCAAATGGCAGCGACATTTCAAGAGCGTCACATTTGGAACCTA-----TT
BF474720At02P003D04D10R1_087.ab1      AGTTGCACCTGTAAATGGCAGCGACATTTCAAGAGCGTCACATTTGGAACCTA-----TT
BF474720Tu01P003D04D10R1_067.ab1      AGCTGCAACTGCAAATGGCAGCGACATTTCAAGAGCGTCACATTTGGAACTTA-----TT
BF474720As01P003D04D10R1_071.ab1      AGCTGCACCTGCAAATGGCAGCGACATTTCGAGAGCGTCACATTTGGAACCTA-----TT
BF474720Ld05P003D04D10R1_043.ab1      GGCGGC------------CGGGAGCATGC-----------GACGTCGGGCCCA-------
BF474720Ld08P003D04D10R1_063.ab1      AGTTGCACCTGCAAATGGCAGCAGCATTC---AATAGTCAGATATGGAACCTATATTTTT
                                       *  **            * *   ***              *  * *             

BF474720Ld01P003D04D10R1_011.ab1      ------------------------------------------------------------
BF474720Ld09P003D04D10R1_075.ab1      ------------------------------------------------------------
BF474720Ld03P003D04D10R1_027.ab1      TCATCAAGCTTCTAGTAAGACTAACGAGCTTATATGATTACCTTCTTTTGTGAGAACAGA
BF474720Ld06P003D04D10R1_047.ab1      TCATCAAGCTTCTAGTAAGACTAACGAGCTTATATGATTACCTTCTTTTGTGAGAACAGA
BF474720At01P003D04D10R1_083.ab1      TCATCAATCTTCTAGTAAGAGTAATGAGCTTATATCGTTACCTTCTTTTGTAAGAACAGA
BF474720At02P003D04D10R1_087.ab1      TCATCAATCTTCTAGTAAGAGTAATGAGCTTATATCGTTACCTTCTTTTGTAAGAACAGA
BF474720Tu01P003D04D10R1_067.ab1      TCATCAATCTTCTAGTAAGAGTAATGAGCTTATATCGTTACCTTCTTTTGTAAGAACAGA
BF474720As01P003D04D10R1_071.ab1      TCATCAATCTTCTAGTAAGAGTAATGAGCTTATATCGTTACCTTCTTTTGTAAGAACAGA
BF474720Ld05P003D04D10R1_043.ab1      ------------------------------------------------------------
BF474720Ld08P003D04D10R1_063.ab1      TCACCAAGCTTCCAGTAAGACTAACA-------ATGATCACCTTCTTTTGTACGAAGAGA
                                                                                                  

BF474720Ld01P003D04D10R1_011.ab1      ------------------------ATTCGCCCTA--------------------------
BF474720Ld09P003D04D10R1_075.ab1      ------------------------ATTCGCCCTA--------------------------
BF474720Ld03P003D04D10R1_027.ab1      TGATTCAGGAGAAACTGGAGGAACATTTGGTCTAGGTCTTTTGACACGAGAAAGAGGAAG
BF474720Ld06P003D04D10R1_047.ab1      TGATTCAGGAGAAACTGGAGGAACATTTGGTCTAGGTCTTTTGACACGAGAAAGAGGAAG
BF474720At01P003D04D10R1_083.ab1      TGATTCAGGAGAAACTGGAGGAACATTTGGTCTAGGTCTTTTGACA--------------
BF474720At02P003D04D10R1_087.ab1      TGATTCAGGAGAAACTGGAGGAACATTTGGTCTAGGTCTTTTGACAC-------------
BF474720Tu01P003D04D10R1_067.ab1      TGATTCAGGAGAAACTGGAGGAACATTTGGTCTAGGTCTTTTG-----------------
BF474720As01P003D04D10R1_071.ab1      TGATTCAGGAGAAACTGGAGGAACATTTGGTCTAGGTCTTTTG-----------------
BF474720Ld05P003D04D10R1_043.ab1      ------------------------ATTCGCCCTA--------------------------
BF474720Ld08P003D04D10R1_063.ab1      CGATTCAGGAGAAGCTGGAGGAACATTTGGTCTAGATCTTTTGACACGAGAAAGAGGAAG
                                                              *** *  ***                          

BF474720Ld01P003D04D10R1_011.ab1      ------------------------------------------------------------
BF474720Ld09P003D04D10R1_075.ab1      ------------------------------------------------------------
BF474720Ld03P003D04D10R1_027.ab1      CGAATCGAATTCCCGCGGC-CGCCATGGCGGCCGGGAGCATGCGACGTCGGGCCCAATTC
BF474720Ld06P003D04D10R1_047.ab1      CGAATCGAATTCCCGCGGCGCCCCATGGCGGACGGGAGCATGCGACGTCGGGCCCAATTC
BF474720At01P003D04D10R1_083.ab1      ------------------------------------------------------------
BF474720At02P003D04D10R1_087.ab1      ------------------------------------------------------------
BF474720Tu01P003D04D10R1_067.ab1      ------------------------------------------------------------
BF474720As01P003D04D10R1_071.ab1      ------------------------------------------------------------
BF474720Ld05P003D04D10R1_043.ab1      ------------------------------------------------------------
BF474720Ld08P003D04D10R1_063.ab1      CGAATCA-----------------------------------------------------
                                                                                                  

BF474720Ld01P003D04D10R1_011.ab1      ------TAGTGAGTC---------------------------------------------
BF474720Ld09P003D04D10R1_075.ab1      ------TAGTGAGTC---------------------------------------------
BF474720Ld03P003D04D10R1_027.ab1      GCCCTATAGTGAGTC---------------------------------------------
BF474720Ld06P003D04D10R1_047.ab1      GCCCTATAGTGAGTC---------------------------------------------
BF474720At01P003D04D10R1_083.ab1      ------------------------------------------------------------
BF474720At02P003D04D10R1_087.ab1      ------------------------------------------------------------
BF474720Tu01P003D04D10R1_067.ab1      ------------------------------------------------------------
BF474720As01P003D04D10R1_071.ab1      ------------------------------------------------------------
BF474720Ld05P003D04D10R1_043.ab1      ------TAGTGAGTC---------------------------------------------
BF474720Ld08P003D04D10R1_063.ab1      -----CTAGTGAATTCGCGGCCGCCTGCAGGTCGACCATATGGGAGAGCTCCCAACGCGT
                                                                                                  

BF474720Ld01P003D04D10R1_011.ab1      --------------------------GTATTAC--AATTCAC
BF474720Ld09P003D04D10R1_075.ab1      --------------------------GTATTAC--AATTCAC
BF474720Ld03P003D04D10R1_027.ab1      --------------------------GTATTAC--AATT---
BF474720Ld06P003D04D10R1_047.ab1      --------------------------GTATT-----------
BF474720At01P003D04D10R1_083.ab1      ------------------------------------------
BF474720At02P003D04D10R1_087.ab1      ------------------------------------------
BF474720Tu01P003D04D10R1_067.ab1      ------------------------------------------
BF474720As01P003D04D10R1_071.ab1      ------------------------------------------
BF474720Ld05P003D04D10R1_043.ab1      --------------------------GTATTAC--AATTCAC
BF474720Ld08P003D04D10R1_063.ab1      TGGATGCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGC