MUSCLE (3.6) multiple sequence alignment


BG313152At02P003E05E111R1_10.ab1      ----------------------------------------AAGTGACTTGCTCTCCCTTC
BG313152Tu01P003E05E111R1_09.ab1      --------------TTAT-ATGTGATCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
BG313152Ln04P003E05E111R1_10.ab1      --CATAGATGCTTCTTAA-ATGTGATCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
BG313152Ln07P003E05E111R1_09.ab1      ---ATAGATGCTTCTAAA-ATGTGAGCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
BG313152Ln06P003E05E111R1_10.ab1      ----TAGATGCTTCTTAATATGTGAGCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
BG313152Ln01P003E05E111R1_09.ab1      --------------------TGTGATCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
BG313152Ln03P003E05E111R1_09.ab1      ---ATAGATGCTTCTTAA-ATGTGATCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
BG313152Ln02P003E05E111R1_10.ab1      -TCATAGATGCTTCTAAA-ATGTGAGCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
BG313152Ln05P003E05E111R1_09.ab1      --CATAGATGCTTCTTAA-ATGTGATCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
BG313152Ln08P003E05E111R1_10.ab1      ATCATAGATGCTTCTTAA-ATGTGAGCTGGACTATCAAAGAAGTGACTTGCTCTGACTTC
                                                                              **************  ****

BG313152At02P003E05E111R1_10.ab1      ATGCCATGGATCCATGGCTATGGACAATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Tu01P003E05E111R1_09.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Ln04P003E05E111R1_10.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Ln07P003E05E111R1_09.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Ln06P003E05E111R1_10.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Ln01P003E05E111R1_09.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Ln03P003E05E111R1_09.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Ln02P003E05E111R1_10.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Ln05P003E05E111R1_09.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
BG313152Ln08P003E05E111R1_10.ab1      ATGCCATGGATCCATGGCAATGGA-AATAATTGCAGTTGTTATTGCCATCACCGGGGTAA
                                      ****************** ***** ***********************************

BG313152At02P003E05E111R1_10.ab1      CATAACTCATTAACGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAATATGATGCTG
BG313152Tu01P003E05E111R1_09.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAAAATGATGCTG
BG313152Ln04P003E05E111R1_10.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAAAATGATGCTG
BG313152Ln07P003E05E111R1_09.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAAAATGATGCTG
BG313152Ln06P003E05E111R1_10.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAAAATGATGCTG
BG313152Ln01P003E05E111R1_09.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAAAATGATGCTG
BG313152Ln03P003E05E111R1_09.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAAAATGATGCTG
BG313152Ln02P003E05E111R1_10.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACGCAATAAAAATGATGCTG
BG313152Ln05P003E05E111R1_09.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAAAATGATGCTG
BG313152Ln08P003E05E111R1_10.ab1      CATAACTCATTAAGGTGAAGGGGTTCTTTAATCCTGCATAACACAATAAAAATGATGCTG
                                      ************* **************************** ******* *********

BG313152At02P003E05E111R1_10.ab1      TAAAGGATGCAACCTTACATAGTTATTGAACAAAACACGTTCGATATTATCATTCTCAAA
BG313152Tu01P003E05E111R1_09.ab1      TAAAGGATGCTGCATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTGATA
BG313152Ln04P003E05E111R1_10.ab1      TAAAGGATGCTACATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTCATA
BG313152Ln07P003E05E111R1_09.ab1      TAAAGGATGCTACATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTGATA
BG313152Ln06P003E05E111R1_10.ab1      TAAAGGATGCTACATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTCATA
BG313152Ln01P003E05E111R1_09.ab1      TAAAGGATGCTACATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTCATA
BG313152Ln03P003E05E111R1_09.ab1      TAAAGGATGCTACATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTCATA
BG313152Ln02P003E05E111R1_10.ab1      TAAAGGATGCTACATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTCATA
BG313152Ln05P003E05E111R1_09.ab1      TAAAGGATGCTACATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTCATA
BG313152Ln08P003E05E111R1_10.ab1      TAAAGGATGCTACATTACATATTTATTGAACAAATCACGTTCGATATTATCATTTTCATA
                                      **********  * ******* ************ ******************* * * *

BG313152At02P003E05E111R1_10.ab1      --TTTTAAGAGAAAACTATGCACATAACAACTAC--------------------------
BG313152Tu01P003E05E111R1_09.ab1      TTTTTTAAGAGAAGACAATGCACATAGCCGCTACAGCTCATACTGATGCACTAACTCAGA
BG313152Ln04P003E05E111R1_10.ab1      --TTTTAAGAGAAAACAATGCACATAACAGCTACAGCTCATACTGATGCACTAACTCAGA
BG313152Ln07P003E05E111R1_09.ab1      TTTTTTAAGAGAAAACAATGCACATAACAGCTACAGCTCATACTGATGCACTAACTCAGA
BG313152Ln06P003E05E111R1_10.ab1      --TTTTAAGAGAAAACAATGCACATAACAGCTACAGCTCATACTGATGCACTAACTCAGA
BG313152Ln01P003E05E111R1_09.ab1      --TTTTAAGAGAAAACAATGCACATAACAGCTACAGCTCATACTGATGCACTAACTCAGA
BG313152Ln03P003E05E111R1_09.ab1      --TTTTAAGAGAAAACAATGCACATAACAGCTACAGCTCATACTGATGCACTAACTCAGA
BG313152Ln02P003E05E111R1_10.ab1      --TTTTAAGAGAAAACAATGCACATAACAGCTACAGCTCATACTGATGCACTAACTCAGA
BG313152Ln05P003E05E111R1_09.ab1      --TTTTAAGAGAAAACAATGCACATAACAGCTACAGCTCATACTGATGCACTAACTCAGA
BG313152Ln08P003E05E111R1_10.ab1      --TTTTAAGAGAAAACAATGCACATAACAGCTACAGCTCATACTGATGCACTAACTCAGA
                                        *********** ** ********* *  ****                          

BG313152At02P003E05E111R1_10.ab1      ------------------------------------------------------------
BG313152Tu01P003E05E111R1_09.ab1      TTTAAACAAAAACAGGTGTCCATTGAAAATACATAAGTCATACATGTGCCTGAAATTAAT
BG313152Ln04P003E05E111R1_10.ab1      TTTAAACAAAAACAGGTGTCCATTGAAAATACATGAGTCATACATGTGCCTGAAATTAAT
BG313152Ln07P003E05E111R1_09.ab1      TTTAAACAAAAACAGGTGTCCATTGGAAATATATAAGTCATACATGTGCCTGAAATTAAT
BG313152Ln06P003E05E111R1_10.ab1      TTTAAACAAAAACAGGTGTCCATTGGAAATATATAAGTCATACATGTGCCTGAAATTAAT
BG313152Ln01P003E05E111R1_09.ab1      TTTAAACAAAAACAGGTGTCCATTGGAAATATATAAGTCATACATGTGCCTGAAATTAAT
BG313152Ln03P003E05E111R1_09.ab1      TTTAAACAAAAACAGGTGTCCATTGGAAATATATAAGTCATACATGTGCCTGAAATTAAT
BG313152Ln02P003E05E111R1_10.ab1      TTTAAACAAAAACAGGTGTCCATTGGAAATATATAAGTCATACATGTGCCTGAAATTAAT
BG313152Ln05P003E05E111R1_09.ab1      TTTAAACAAAAACAGGTGTCCATTGGAAATATATAAGTCATACATGTGCCTGAAATTAAT
BG313152Ln08P003E05E111R1_10.ab1      TTTAAACAAAAACAGGTGTCCATTGGAAATATATAAGTCATACATGTGCCTGAAATTAAT
                                                                                                  

BG313152At02P003E05E111R1_10.ab1      ------------------------------------------------------------
BG313152Tu01P003E05E111R1_09.ab1      AAAGCTAATCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACGACAACGAACAG
BG313152Ln04P003E05E111R1_10.ab1      AAAGCTAATCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACAACAACGAACAG
BG313152Ln07P003E05E111R1_09.ab1      AAAGC---TCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACAACAACGAACAG
BG313152Ln06P003E05E111R1_10.ab1      AAAGC---TCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACAACAACGAACAG
BG313152Ln01P003E05E111R1_09.ab1      AAAGC---TCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACAACAACGAACAG
BG313152Ln03P003E05E111R1_09.ab1      AAAGC---TCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACAACAACGAACAG
BG313152Ln02P003E05E111R1_10.ab1      AAAGC---TCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACAACAACGAACAG
BG313152Ln05P003E05E111R1_09.ab1      AAAGC---TCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACGACAACGAACAG
BG313152Ln08P003E05E111R1_10.ab1      AAAGC---TCTCGCTGCTTTTCAGTTTTCAAGAATGAGATGCTAAGACAACAACGAACAG
                                                                                                  

BG313152At02P003E05E111R1_10.ab1      ------------------------------------------------------------
BG313152Tu01P003E05E111R1_09.ab1      TATTTATAATTTCCTCTCACTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
BG313152Ln04P003E05E111R1_10.ab1      TATTTATAATTTCCTCTCACTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
BG313152Ln07P003E05E111R1_09.ab1      TATTTATAATTTCCTCTCACTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
BG313152Ln06P003E05E111R1_10.ab1      TATTTATAATTTCCTCTCACTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
BG313152Ln01P003E05E111R1_09.ab1      TATTTATAATTTCCTCTCACTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
BG313152Ln03P003E05E111R1_09.ab1      TATTTATAATTTCCTCTCGCTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
BG313152Ln02P003E05E111R1_10.ab1      TATTTATAATTTCCTCTCACTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
BG313152Ln05P003E05E111R1_09.ab1      TATTTATAATTTCCTCTCACTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
BG313152Ln08P003E05E111R1_10.ab1      TATTTATAATTTCCTCTCACTGGACAAGAAGCTAAGATAGAACGCATACCATATTCCTCT
                                                                                                  

BG313152At02P003E05E111R1_10.ab1      ------------------------------------------------------------
BG313152Tu01P003E05E111R1_09.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGTAAAAGAAAAGTTCAGTCAGGACAGGAAT
BG313152Ln04P003E05E111R1_10.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGTAAAAGAAAAGTTCAGTCAGGACAGGAAT
BG313152Ln07P003E05E111R1_09.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGTAAAAGAAAAGTTCAGTCAGGACAGGAAT
BG313152Ln06P003E05E111R1_10.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGGAAAAGAAAAGTTCAGTCAGGACAGGAAT
BG313152Ln01P003E05E111R1_09.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGGAAAAGAAAAGTTCAGTCAGGACAGGAAT
BG313152Ln03P003E05E111R1_09.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGGAAAAGAAAAGTTCAGTCAGGACAGGAAT
BG313152Ln02P003E05E111R1_10.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGGAAAAGAAAAGTTCAGTCAGGACAGGAAT
BG313152Ln05P003E05E111R1_09.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGGAAAAGAAAAGTTCAGTCAGGACAGGAAT
BG313152Ln08P003E05E111R1_10.ab1      TTCTTCAGCAGATTTAAGGGACGCATAAGGGGAAAAGAAAAGTTCAGTCAGGACAGGAAT
                                                                                                  

BG313152At02P003E05E111R1_10.ab1      ------------------------------------------------------------
BG313152Tu01P003E05E111R1_09.ab1      GAAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACC--------------ATGTTC
BG313152Ln04P003E05E111R1_10.ab1      GAAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACC--------------ATGTTC
BG313152Ln07P003E05E111R1_09.ab1      GAAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACC--------------ATGTTC
BG313152Ln06P003E05E111R1_10.ab1      GAAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACC--------------ATGTTC
BG313152Ln01P003E05E111R1_09.ab1      GGAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACCATGTCCAATCACCAATGTTC
BG313152Ln03P003E05E111R1_09.ab1      GGAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACCATGTCCAATCACCAATGTTC
BG313152Ln02P003E05E111R1_10.ab1      GGAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACCATGTCCAATCACCAATGTTC
BG313152Ln05P003E05E111R1_09.ab1      GGAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACCATGTCCAATCACCAATGTTC
BG313152Ln08P003E05E111R1_10.ab1      GGAAGGGAAGTAGAACATAGGATTAATAAGGCATATTACCATGTCCAATCACCAATGTTC
                                                                                                  

BG313152At02P003E05E111R1_10.ab1      ------------------------------------------------------------
BG313152Tu01P003E05E111R1_09.ab1      AGAACA-AAAAAATGGAAGTACTACATTACACTGACAAACCTGGA---------------
BG313152Ln04P003E05E111R1_10.ab1      AGAACA-AAAAAATGGAAGTACTACATTACACTGACAAACCTGGAGGAGAATCTGTGTCA
BG313152Ln07P003E05E111R1_09.ab1      AGAACA-AAAAAATGGAAGTACTACATTACACTGACAAACCTGGAGGAGAATCTGTGTCA
BG313152Ln06P003E05E111R1_10.ab1      AGAACA-AAAAAATGGAAGTACTACATTACACTGACAAACCTGGAGGAGAATCTGTGTCA
BG313152Ln01P003E05E111R1_09.ab1      AGAACATAAAATATGGAAGTACTACATTACACTGACAAACCTGGAGGAGAATCTGTGTCA
BG313152Ln03P003E05E111R1_09.ab1      AGAACATAAAAAATGGAAGTACTACATTACACTGACAAACCTGGAGGAGAATCTGTGTCA
BG313152Ln02P003E05E111R1_10.ab1      AGAACATAAAAAATGGAAGTACTACATTACACTGACAAACCTGGAGGAGAATCTGTGTCA
BG313152Ln05P003E05E111R1_09.ab1      AGAACATAAAAAATGGAAGTACTACATTACACTGACAAACCTGGAGGAGAATCTGTGTCA
BG313152Ln08P003E05E111R1_10.ab1      AGAACATAAAAAATGGAAGTACTACATTACACTGACAAACCTGGAGGAGAATCTGTGTCA
                                                                                                  

BG313152At02P003E05E111R1_10.ab1      ------------------------------------------------------------
BG313152Tu01P003E05E111R1_09.ab1      ------------------------------------------------------------
BG313152Ln04P003E05E111R1_10.ab1      TGCACCAGCAATCACTAGTGAATTCGCGGCCGCCT-------------------------
BG313152Ln07P003E05E111R1_09.ab1      TGCACCAGCAATCACTAGTGAATTCGCGGCCGCCTGCAGGTCGACCATATGGGAGAGCTC
BG313152Ln06P003E05E111R1_10.ab1      TGCACCAGCAATCACTAGTGAATTCGCGGCCGCCTGCAGGTCGACCATATGGGAGAGCTC
BG313152Ln01P003E05E111R1_09.ab1      TGCACC------------------------------------------------------
BG313152Ln03P003E05E111R1_09.ab1      TGCACCAGCAATCACTAGTGAATTCGCGGCCGCCTGC-----------------------
BG313152Ln02P003E05E111R1_10.ab1      TGCACCAGCAATCACTAGTGAATTCGCGGCCGCCTGCAGGTCGACCATATGGG-------
BG313152Ln05P003E05E111R1_09.ab1      TGCACCAGCAATCACTAGTGAATTCGCGGCCGCCTGCAGGTCGACCATATGGGAGAGCTC
BG313152Ln08P003E05E111R1_10.ab1      TGCACCAGCAATCACTAGTGAATTCGCGGCCGCCTGCAGGTCGACCATATGGGAGAGCTC
                                                                                                  

BG313152At02P003E05E111R1_10.ab1      --------------------------------
BG313152Tu01P003E05E111R1_09.ab1      --------------------------------
BG313152Ln04P003E05E111R1_10.ab1      --------------------------------
BG313152Ln07P003E05E111R1_09.ab1      CCACGCGTTGGATGCAT---------------
BG313152Ln06P003E05E111R1_10.ab1      CCACGCGTTGGATGCATAGCTTGAGTATCTAT
BG313152Ln01P003E05E111R1_09.ab1      --------------------------------
BG313152Ln03P003E05E111R1_09.ab1      --------------------------------
BG313152Ln02P003E05E111R1_10.ab1      --------------------------------
BG313152Ln05P003E05E111R1_09.ab1      CCACGCGTTGGATGCAT---------------
BG313152Ln08P003E05E111R1_10.ab1      CCACGCGTTGGATGCAT---------------