MUSCLE (3.6) multiple sequence alignment BG605323As01P003B01B071M1 --------------------------------------------CCGTATGCATCGTTCT BG605323Ln01P003B01B071C1 -----------TACGACTCACCATAGGGCGAATTGGGCCGGACGTCGCATGCTCCTGGCC BG605323Ln04P003B01B071C1 ----------ATACGACTCACTATAGGGCGAATTGGGCCCGACGTCGCATGCTCCCGGCC BG605323Ln02P003B01B071C1 ----------ATACGACTCACTATAGGGCGAATTGGGCCCGACGTCGCATGCTCCCGGCC BG605323Ln05P003B01B071C1 ----------ATACGACTCACTATAGGGCGAATTGGGCCCGACGTCGCATGCTCCCGGCC BG605323Ln06P003B01B071C1 -----------TACGACTCACTATAGGGCGAATTGGGCCCGACGTCGCATGCTCCCGGCC BG605323Ln07P003B01B071C1 -----------TACGACTCACTATAGGGCGAATTGGGCCCGACGTCGCATGCTCCCGGCC BG605323Ln08P003B01B071C1 ----------ATACGACTCACTATAGGGCGAATTGGGCCCGACGTCGCATGCTCCCGGCC BG605323Ln03P003B01B071C1 GTGAATTGTAATACGACTCACTATAGGGCGAATTGGGCCTGATGTCGCATGCTCCCGTCC BG605323Tu01P003B01B071C1 ------------------------------------------------------------ BG605323As01P003B01B071M1 GATGCAGAGGCCGGGGAGTCCCCCCT------TTTCGAAGGGGACTATATAGAGAGAAAA BG605323Ln01P003B01B071C1 GCCATGGCGGCCGCGGGAATTCGATTAGGATGCTTGTATTGGGGCTAGGAATAATGAAAA BG605323Ln04P003B01B071C1 GCCATGGCGGCCGCGGGAATTCGATTAGGATGCTTCTATTGGGGCTAGGAATAATGAAAA BG605323Ln02P003B01B071C1 GCCATGGCGGCCGCGGGAATTCGATTAGGATGCTTCTATTGGGGCTAGGAATAATGAAAA BG605323Ln05P003B01B071C1 GCCATGGCGGCCGCGGGAATTCGATTAGGATGCTTCTATTGGGGCTAGGAATAATGAAAA BG605323Ln06P003B01B071C1 GCCATGGCGGCCGCGGGAATTCGATTAGGATGCTTCTATTGGGGCTAGGAATAATGAAAA BG605323Ln07P003B01B071C1 GCCATGGCGGCCGCGGGAATTCGATTAGGATGCTTCTATTGGGGCTAGGAATAATGAAAA BG605323Ln08P003B01B071C1 GCCATGGCGGCCGCGGGAATTCGATTAGGATGCTTCTATTGGGGCTAGGAATAATGAAAA BG605323Ln03P003B01B071C1 GCCATGGCGGCCGCGGGAATTCGATTAGGATGCTTCTATTGGGGCTAGGAATAATGAAAA BG605323Tu01P003B01B071C1 --------------------------------------------CTAGGAATAATGAAAA *** * * ***** BG605323As01P003B01B071M1 ATGATGTATTTG-CAAAC----------------AAACCTCATGGCTCCATGATCCATG- BG605323Ln01P003B01B071C1 GTGAATCGACGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC BG605323Ln04P003B01B071C1 ATGAAGCGATGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC BG605323Ln02P003B01B071C1 ATGAAGCGATGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC BG605323Ln05P003B01B071C1 ATGAAGCGATGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC BG605323Ln06P003B01B071C1 ATGAAGCGATGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC BG605323Ln07P003B01B071C1 ATGAAGCGATGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC BG605323Ln08P003B01B071C1 ATGAAGCGATGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC BG605323Ln03P003B01B071C1 ATGAAGCGATGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC BG605323Tu01P003B01B071C1 ATGAAGCGATGGTCAAATCAATGAGCCGATCTGGAGACCACA-GGTGCCACAGTCAATGC *** * **** * *** ** ** *** ** *** BG605323As01P003B01B071M1 ------------------TGCAG---TTTTG----AAGAATCTCACCATGTTGCTTGCTA BG605323Ln01P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA BG605323Ln04P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA BG605323Ln02P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA BG605323Ln05P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA BG605323Ln06P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA BG605323Ln07P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA BG605323Ln08P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA BG605323Ln03P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA BG605323Tu01P003B01B071C1 CAACCCTTTGTTATTTAATACAGATCTTTTGTCTTGAGATTCT--CCTTTTCATTTTCTA * *** ***** *** *** ** * * ** *** BG605323As01P003B01B071M1 AAGCACAGCCAACAGAGGGGGTGTCCTTTGA-TGGGTCATGTAAAAACCTC-----ACCT BG605323Ln01P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGACCGGTTCAGGTTATGATTCCTTTCTTCCT BG605323Ln04P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGACCGGTTCAGGTTATGATTCCTTTCTTCCT BG605323Ln02P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGACCGGTTCAGGTTATGATTCCTTTCTTCCT BG605323Ln05P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGACCGGTTCAGGTTATGATTCCTTTCTTCCT BG605323Ln06P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGACCGGTTCAGGTTATGATTCCTTTCTTCCT BG605323Ln07P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGACCGGTTCAGGTTATGATTCCTTTCTTCCT BG605323Ln08P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGACCGGTTCAGGTTATGATTCCTTTCTTCCT BG605323Ln03P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGACCGGTTCAGGTTATGATTCCTTTCTTCCT BG605323Tu01P003B01B071C1 TGGCATTATC-------GAGTCTTGCTTTGGCCGGTTCAGGTTATGATTCCTTTCTTCCT *** * * * * ***** ** *** ** * * * *** BG605323As01P003B01B071M1 G-------------CAAAGAAAA----TAAAAAAAGAACTGTG----------------- BG605323Ln01P003B01B071C1 GTTTTTCTTTTGAACATAGGGAACTTCTCAAGGGACCACTGTATTATGCCACTACTATAA BG605323Ln04P003B01B071C1 GTTTTTCTTTTGAACATAGGGAGCTTCTCAAGGGACCACTGTATTATGCCACTACTATAA BG605323Ln02P003B01B071C1 GTTTTTCTTTTGAACATAGGGAACTTCTCAAGGGACCACTGTATTATGCCACTACTATAA BG605323Ln05P003B01B071C1 GTTTTTCTTTTGAACATAGGGAACTTCTCAAGGGACCACTGTATTATGCCACTACTATAA BG605323Ln06P003B01B071C1 GTTTTTCTTTTGAACATAGGGAACTTCTCAAGGGACCACTGTATTATGCCACTACTATAA BG605323Ln07P003B01B071C1 GTTTTTCTTTTGAACATAGGGAACTTCTCAAGGGACCACTGTATTATGCCACTACTATAA BG605323Ln08P003B01B071C1 GTTTTTCTTTTGAACATAGGGAACTTCTCAAGGGACCACTGTATTATGCCACTACTATAA BG605323Ln03P003B01B071C1 GTTTTTCTTTTGAACATAGGGAACTTCTCAAGGGACCACTGTATTATGCCACTACTATAA BG605323Tu01P003B01B071C1 GTTTTTCTTTTGAACATAGGGAACTTCTCAAGGGACCACTGTATTATGCCACTACTATAA * ** ** * * ** * ***** BG605323As01P003B01B071M1 --------------------------------------GCTATAGGATATGGGGGCGCCC BG605323Ln01P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT BG605323Ln04P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT BG605323Ln02P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT BG605323Ln05P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT BG605323Ln06P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT BG605323Ln07P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT BG605323Ln08P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT BG605323Ln03P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT BG605323Tu01P003B01B071C1 CTTTGGCCACTTCTGTATTGTGGAGAACATCCCCAATTGCTATAGCACTTGTCTGCAACT ******* * ** ** * BG605323As01P003B01B071M1 TAT-------------TAGACTCCGATACTTGTACTTGATAGTTGA-------------- BG605323Ln01P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA BG605323Ln04P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA BG605323Ln02P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA BG605323Ln05P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA BG605323Ln06P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA BG605323Ln07P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA BG605323Ln08P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA BG605323Ln03P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA BG605323Tu01P003B01B071C1 TATGCGCTGGAGATGGTACGTGCATGTATCTGCATTTCACACTATATGTCCTAGAACAAA *** ** * ** ** * ** * * * * BG605323As01P003B01B071M1 ---------TANNNNNNNNNNTCTGATGC------------------------------- BG605323Ln01P003B01B071C1 TTTTTATCTTGCGCAACATAATCTGCTGCCTATCTTCACACTGTGGCTGTAAACAGTATG BG605323Ln04P003B01B071C1 TTTTTATCTTGCGCAACATAATCTGTTGCCTATCTTCACAC--TGGCTGTAAACAGTATG BG605323Ln02P003B01B071C1 -TTTTATCTTGCGCAACATAATCTGCTGCCTATCTTCACACTGTGGCTGTAAACAGTATG BG605323Ln05P003B01B071C1 TTTTTATCTTGCGCAACATAATCTGCTGCCTATCTTCACACTGTGGCTGTAAACAGTATG BG605323Ln06P003B01B071C1 TTTTTATCTTGCGCAACATAATCTGCTGCCTATCTTCACACTGTGGCTGTAAACAGTATG BG605323Ln07P003B01B071C1 TTTTTATCTTGCGCAACATAATCTGCTGCCTATCTTCACACTGTGGCTGTAAACAGTATG BG605323Ln08P003B01B071C1 TTTTTATCTTGCGCAACATAATCTGCTGCCTATCTTCACACTGTGGCTGTAAACAGTATG BG605323Ln03P003B01B071C1 TTTTTATCTTGCGCAACATAATCTGCTGCCTATCTTCACACTGTGGCTGTAAACAGTATG BG605323Tu01P003B01B071C1 TTTTTATCTTGCGCAACATAATCTGCTGCCTATCTTCACACTGTGGCTGTAAACAGTATG * **** *** BG605323As01P003B01B071M1 -----AGAGGCCGGGGAGTCCCCCCTTTTCGACACCGAATAAAAAGAAAGAAGAAAAGTG BG605323Ln01P003B01B071C1 CCAAAAGAATTAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG BG605323Ln04P003B01B071C1 CCAAAAGAATTAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG BG605323Ln02P003B01B071C1 CCAAAAGAATCAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG BG605323Ln05P003B01B071C1 CCAAAAGAATCAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG BG605323Ln06P003B01B071C1 CCAAAAGAATCAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG BG605323Ln07P003B01B071C1 CCAAAAGAATCAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG BG605323Ln08P003B01B071C1 CCAAAAGAATCAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG BG605323Ln03P003B01B071C1 CCAAAAGAATCAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG BG605323Tu01P003B01B071C1 CCAAAAGAATCAGCTGCTTCGCCCTTCCTAGACGA-----AAGCAGATATAATTAGGCTG *** * * ** *** * * *** ** *** * ** * ** BG605323As01P003B01B071M1 TTT----------------------------TTGCAAACGAACCTCAGTGGCTCCATGAC BG605323Ln01P003B01B071C1 TTCACCCTTCGTCGCTGTATGCTTCCCGGTATAGCAGACGTAGTTGGGAGACGCTTTGGA BG605323Ln04P003B01B071C1 TTCACCCTTCGTCGCTGTATGCTTCCAGGTATAGCAGACGTAGTTGGGAGACGCTTTGGA BG605323Ln02P003B01B071C1 TTCACCCTTCGGCGCTGTATGCTTCCAGGTATAGCAGACGTAGTTGGGAGACGCTTTGGA BG605323Ln05P003B01B071C1 TTCACCCTTCGGCGCTGTATGCTTCCAGGTATAGCAGACGTAGTTGGGAGACGCTTTGGA BG605323Ln06P003B01B071C1 TTCACCCTTCGGCGCTGTATGCTTCCAGGTATAGCAGACGTAGTTGGGAGACGCTTTGGA BG605323Ln07P003B01B071C1 TTCACCCTTCGGCGCTGTATGCTTCCAGGTATAGCAGACGTAGTTGGGAGACGCTTTGGA BG605323Ln08P003B01B071C1 TTCACCCTTCGGCGCTGTATGCTTCCAGGTATAGCAGACGTAGTTGGGAGACGCTTTGGA BG605323Ln03P003B01B071C1 TTCACCCTTCGGCGCTGTATGCTTCCAGGTATAGCAGACGTAGTTGGGAGACGCTTTGGT BG605323Tu01P003B01B071C1 TTCACCCTTCGTCGCTGTATGCTTCCAGGTATAGCAGACGTAT----------------- ** * *** *** * BG605323As01P003B01B071M1 ------------------------------------------------------------ BG605323Ln01P003B01B071C1 ATCACTAGT--------------------------------------------------- BG605323Ln04P003B01B071C1 ATCACTAGT--------------------------------------------------- BG605323Ln02P003B01B071C1 ATCACTAGT--------------------------------------------------- BG605323Ln05P003B01B071C1 ATCACTAGT--------------------------------------------------- BG605323Ln06P003B01B071C1 ATCACTAGT--------------------------------------------------- BG605323Ln07P003B01B071C1 ATCACTAGT--------------------------------------------------- BG605323Ln08P003B01B071C1 ATCACTAGT--------------------------------------------------- BG605323Ln03P003B01B071C1 CTTGAGATTCTCCTTTTCATTTTCTATGGGATTATCGAGTCTTGCTTTGACCGGCTCAGG BG605323Tu01P003B01B071C1 ------------------------------------------------------------ BG605323As01P003B01B071M1 -------------CCATCTGCAGTTT-----------GGAAGAATCTCAC---------- BG605323Ln01P003B01B071C1 ---GAATTCGCGGCCGCCTGCAGGTCTACC--ATATGGGAGAGCTCCCAACGCGTTGGAT BG605323Ln04P003B01B071C1 ---GAATTCGCGGCCGCCTGCAGGTCGACC--ATATGGGAGAGCTCCCAACGCGTTGGAT BG605323Ln02P003B01B071C1 ---GAATTCGCGGCCGCCTGCAGGTCGACC--ATATGGGAGAGCTCCCAACGCGTTGGAT BG605323Ln05P003B01B071C1 ---GAATTCGCGGCCGCCTGCAGGTCGACC--ATATGGGAGAGCTCCCAACGCGTTGGAT BG605323Ln06P003B01B071C1 ---GAATTCGCGGCCGCCTGCAGGTCGACC--ATATGGGAGAGCTCCCAACGCGTTGGAT BG605323Ln07P003B01B071C1 ---GAATTCGCGGCCGCCTGCAGGTCGACC--ATATGGGAGAGCTCCCAACGCGTTGGAT BG605323Ln08P003B01B071C1 ---GAATTCGCGGCCGCCTGCAGGTCGACC--ATATGGGAGAGCTCCCAACGCGTTGGAT BG605323Ln03P003B01B071C1 TTATGATTCCTTTCTTCCTGCTATTCTGTTGAACATAGGGAACTTCTCAGGGA------- BG605323Tu01P003B01B071C1 ------------------------------------------------------------ BG605323As01P003B01B071M1 ------------------------------------- BG605323Ln01P003B01B071C1 GCATA-------------------------------- BG605323Ln04P003B01B071C1 GCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGC BG605323Ln02P003B01B071C1 GCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGC BG605323Ln05P003B01B071C1 GCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGC BG605323Ln06P003B01B071C1 GCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGC BG605323Ln07P003B01B071C1 GCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGC BG605323Ln08P003B01B071C1 GCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGC BG605323Ln03P003B01B071C1 ------------------------------------- BG605323Tu01P003B01B071C1 -------------------------------------