MUSCLE (3.6) multiple sequence alignment


BG605323As01P003B01B071R1_04.ab1      -------------------TCTG-------------------------------------
BG605323Ln01P003B01B071R1_03.ab1      GGTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAACCAGCTAAATCTTTTG
BG605323Ln03P003B01B071R1_03.ab1      -GTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAAGCAGCTGATTCTTTTG
BG605323Ln04P003B01B071R1_04.ab1      GGTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAAGCAGCTAATTCTTTTG
BG605323Tu01P003B01B071R1_03.ab1      -GTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAAGCAGCTGATTCTTTTG
BG605323Ln02P003B01B071R1_04.ab1      -GTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAAGCAGCTGATTCTTTTG
BG605323Ln05P003B01B071R1_03.ab1      -GTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAAGCAGCTGATTCTTTTG
BG605323Ln06P003B01B071R1_04.ab1      -GTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAAGCAGCTGATTCTTTTG
BG605323Ln07P003B01B071R1_03.ab1      -GTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAAGCAGCTGATTCTTTTG
BG605323Ln08P003B01B071R1_04.ab1      -GTGAACAGCCTAATTATATCTGCTTTCGTCTAGGAAGGGCGAAGCAGCTGATTCTTTTG
                                                         ****                                     

BG605323As01P003B01B071R1_04.ab1      ------------------------------------------------------------
BG605323Ln01P003B01B071R1_03.ab1      GCATACTGTTTACAGCCACAGTGTGAAGATAGGCGGCAGATTATGTTGCGCAAGATAAAA
BG605323Ln03P003B01B071R1_03.ab1      GCATACTGTTTACAGCCACAGTGTGAAGATAGGCAGCAGATTATGTCGCGCAAGATAAAA
BG605323Ln04P003B01B071R1_04.ab1      GCATACTGTTTACAGC--CAGTGTGAAGATAGGCAACAGATTATGTTGCGCAAGATAAAA
BG605323Tu01P003B01B071R1_03.ab1      GCATACTGTTTACAGCCACAGTGTGAAGATAGGCAGCAGATTATGTTGCGCAAGATAAAA
BG605323Ln02P003B01B071R1_04.ab1      GCATACTGTTTACAGCCACAGTGTGAAGATAGGCAGCAGATTATGTTGCGCAAGAT-AAA
BG605323Ln05P003B01B071R1_03.ab1      GCATACTGTTTACAGCCACAGTGTGAAGATAGGCAGCAGATTATGTTGCGCAAGATAAAA
BG605323Ln06P003B01B071R1_04.ab1      GCATACTGTTTACAGCCACAGTGTGAAGATAGGCAGCAGATTATGTTGCGCAAGATAAAA
BG605323Ln07P003B01B071R1_03.ab1      GCATACTGTTTACAGCCACAGTGTGAAGATAGGCAGCAGATTATGTTGCGCAAGATAAAA
BG605323Ln08P003B01B071R1_04.ab1      GCATACTGTTTACAGCCACAGTGTGAAGATAGGCAGCAGATTATGTTGCGCAAGATAAAA
                                                                                                  

BG605323As01P003B01B071R1_04.ab1      --------------------------ATGCAGA---------------------------
BG605323Ln01P003B01B071R1_03.ab1      ATTTGTTCTAGGACATATAGGGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAG
BG605323Ln03P003B01B071R1_03.ab1      ATTTGTTCTAGGACATATAGTGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAT
BG605323Ln04P003B01B071R1_04.ab1      ATTTGTTCTAGGACATATAGTGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAT
BG605323Tu01P003B01B071R1_03.ab1      ATTTGTTCTAGGACATATAGTGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAT
BG605323Ln02P003B01B071R1_04.ab1      ATTTGTTCTAGGACATATAGTGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAT
BG605323Ln05P003B01B071R1_03.ab1      ATTTGTTCTAGGACATATAGTGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAT
BG605323Ln06P003B01B071R1_04.ab1      ATTTGTTCTAGGACATATAGTGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAT
BG605323Ln07P003B01B071R1_03.ab1      ATTTGTTCTAGGACATATAGTGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAT
BG605323Ln08P003B01B071R1_04.ab1      ATTTGTTCTAGGACATATAGTGTGAAATGCAGATACATGCACGTACCATCTCCAGCGCAT
                                                                *******                           

BG605323As01P003B01B071R1_04.ab1      -----------------------------------------------------GGCC---
BG605323Ln01P003B01B071R1_03.ab1      AATTTGCATACCAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAATGGCCAAA
BG605323Ln03P003B01B071R1_03.ab1      AAGTTGCAGACAAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAGTGGCCAAA
BG605323Ln04P003B01B071R1_04.ab1      AAGTTGCAGACAAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAGTGGCCAAA
BG605323Tu01P003B01B071R1_03.ab1      AAGTTGCAGACAAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAGTGGCCAAA
BG605323Ln02P003B01B071R1_04.ab1      AAGTTGCAGACAAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAGTGGCCAAA
BG605323Ln05P003B01B071R1_03.ab1      AAGTTGCAGACAAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAGTGGCCAAA
BG605323Ln06P003B01B071R1_04.ab1      AAGTTGCAGACAAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAGTGGCCAAA
BG605323Ln07P003B01B071R1_03.ab1      AAGTTGCAGACAAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAGTGGCCAAA
BG605323Ln08P003B01B071R1_04.ab1      AAGTTGCAGACAAGTGCTATAGCAATTGGGGATGTTCTCCACAATACAGAAGTGGCCAAA
                                                                                           ****   

BG605323As01P003B01B071R1_04.ab1      --------------------------------GGGGAGTCCCCCCTTTTCGACACCGAAT
BG605323Ln01P003B01B071R1_03.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGTTCCCTATGTTCAAAA--GAAA
BG605323Ln03P003B01B071R1_03.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGTTCCCTATGTTCAAAA--GAAA
BG605323Ln04P003B01B071R1_04.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGCTCCCTATGTTCAAAA--GAAA
BG605323Tu01P003B01B071R1_03.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGTTCCCTATGTTCAAAA--GAAA
BG605323Ln02P003B01B071R1_04.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGTTCCCTATGTTCAAAA--GAAA
BG605323Ln05P003B01B071R1_03.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGTTCCCTATGTTCAAAA--GAAA
BG605323Ln06P003B01B071R1_04.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGTTCCCTATGTTCAAAA--GAAA
BG605323Ln07P003B01B071R1_03.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGTTCCCTATGTTCAAAA--GAAA
BG605323Ln08P003B01B071R1_04.ab1      GTTATAGTAGTGGCATAATACAGTGGTCCCTTGAGAAGTTCCCTATGTTCAAAA--GAAA
                                                                      * * **  ***  * *** * *  *** 

BG605323As01P003B01B071R1_04.ab1      AAAAAGAAAGAAGAAA---------------------------------AGTGTTTTTGC
BG605323Ln01P003B01B071R1_03.ab1      AACGGGAAGAAAGGAATCATAACCTGAACCGGTCAGAGCAAGACTCCATCATGCCCTATA
BG605323Ln03P003B01B071R1_03.ab1      AACAGGAAGAAAGGAATCATAACCTGAACCGGTCAAAGCAAGACTCGATAATGCCATAGA
BG605323Ln04P003B01B071R1_04.ab1      AACAGGAAGAAAGGAATCATAACCTGAACCGGTCAAAGCAAGACTCGATAATGCCATAGA
BG605323Tu01P003B01B071R1_03.ab1      AACAGGAAGAAAGGAATCATAACCTGAACCGGCCAAAGCAAGACTCGATAATGCCATAGA
BG605323Ln02P003B01B071R1_04.ab1      AACAGGAAGAAAGGAATCATAACCTGAACCGGTCAAAGCAAGACTCGATAATGCCATAGA
BG605323Ln05P003B01B071R1_03.ab1      AACAGGAAGAAAGGAATCATAACCTGAACCGGTCAAAGCAAGACTCGATAATGCCATAGA
BG605323Ln06P003B01B071R1_04.ab1      AACAGGAAGAAAGGAATCATAACCTGAACCGGTCAAAGCAAGACTCGATAATGCCATAGA
BG605323Ln07P003B01B071R1_03.ab1      AACAGGAAGAAAGGAATCATAACCTGAACCGGTCAAAGCAAGACTCGATAATGCCATAGA
BG605323Ln08P003B01B071R1_04.ab1      AACAGGAAGAAAGGAATCATAACCTGAACCGGTCAAAGCAAGACTCGATAATGCCATAGA
                                      **   ***  *** **                                   **   *   

BG605323As01P003B01B071R1_04.ab1      AAAC--------GAACCTCA----------------------------------------
BG605323Ln01P003B01B071R1_03.ab1      AAATGAGAAGGAGAATCTCACGACAGAAGATCTGTATTAAATGACACAGGGTTGGCATTG
BG605323Ln03P003B01B071R1_03.ab1      AAATGAAAAGGAGAATCTCAAGACCAAAGATCTGTATTAAATAACAAAGGGTTGGCATTG
BG605323Ln04P003B01B071R1_04.ab1      AAATGAAAAGGAGAATCTCAAGACAAAAGATCTGTATTAAATAACAAAGGGTTGGCATTG
BG605323Tu01P003B01B071R1_03.ab1      AAATGAAAAGGAGAATCTCAAGACAAAAGATCTGTATTAAATAACAAAGGGTTGGCATTG
BG605323Ln02P003B01B071R1_04.ab1      AAATGAAAAGGAGAATCTCAAGACAAAAGATCTGTATTAAATAACAAAGGGTTGGCATTG
BG605323Ln05P003B01B071R1_03.ab1      AAATGAAAAGGAGAATCTCAAGACAAAAGATCTGTATTAAATAACAAAGGGTTGGCATTG
BG605323Ln06P003B01B071R1_04.ab1      AAATGAAAAGGAGAATCTCAAGACAAAAGATCTGTATTAAATAACAAAGGGTTGGCATTG
BG605323Ln07P003B01B071R1_03.ab1      AAATGAAAAGGAGAATCTCAAGACAAAAGATCTGTATTAAATAACAAAGGGTTGGCATTG
BG605323Ln08P003B01B071R1_04.ab1      AAATGAAAAGGAGAATCTCAAGACAAAAGATCTGTATTAAATAACAAAGGGTTGGCATTG
                                      ***         *** ****                                        

BG605323As01P003B01B071R1_04.ab1      ---GTGGCTCCA--------------------------TGACC-------CATCTGCAGT
BG605323Ln01P003B01B071R1_03.ab1      ACTGTGGCACCAGTGGTCTCCAGATCGGCTCACTGATTTGACCGTCGATTCACTTTTCAT
BG605323Ln03P003B01B071R1_03.ab1      ACTGTGGCACCTGAGGGCTCCACATCGGCTCAATGATTTGACCATCGCTTCATTTTTCAT
BG605323Ln04P003B01B071R1_04.ab1      ACTGTGGCACCTGTGGTCTCCAGATCGGCTCATTGATTTGACCATCGCTTCATTTTTCAT
BG605323Tu01P003B01B071R1_03.ab1      ACTGTGGCACCTGTGGTCTCCAGATCGGCTCATTGATTTGACCATCGCTTCATTTTTCAT
BG605323Ln02P003B01B071R1_04.ab1      ACTGTGGCACCTGTGGTCTCCAGATCGGCTCATTGATTTGACCATCGCTTCATTTTTCAT
BG605323Ln05P003B01B071R1_03.ab1      ACTGTGGCACCTGTGGTCTCCAGATCGGCTCATTGATTTGACCATCGCTTCATTTTTCAT
BG605323Ln06P003B01B071R1_04.ab1      ACTGTGGCACCTGTGGTCTCCAGATCGGCTCATTGATTTGACCATCGCTTCATTTTTCAT
BG605323Ln07P003B01B071R1_03.ab1      ACTGTGGCACCTGTGGTCTCCAGATCGGCTCATTGATTTGACCATCGCTTCATTTTTCAT
BG605323Ln08P003B01B071R1_04.ab1      ACTGTGGCACCTGTGGTCTCCAGATCGGCTCATTGATTTGACCATCGCTTCATTTTTCAT
                                         ***** **                           *****       **  *    *

BG605323As01P003B01B071R1_04.ab1      T--------------TGGAAGAATCTCAC-------------------------------
BG605323Ln01P003B01B071R1_03.ab1      TATTCCTAGCCCCAATACAAGCATCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCAGG
BG605323Ln03P003B01B071R1_03.ab1      TATTCCTAGCCCCAATAGAAGCATCCTAATCGAATTCCCGCGGCCGCCATGGCGGACGGG
BG605323Ln04P003B01B071R1_04.ab1      TATTCCTAGCCCCAATAGAAGCATCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCGGG
BG605323Tu01P003B01B071R1_03.ab1      TATTCCTAG---------------------------------------------------
BG605323Ln02P003B01B071R1_04.ab1      TATTCCTAGCCCCAATAGAAGCATCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCGGG
BG605323Ln05P003B01B071R1_03.ab1      TATTCCTAGCCCCAATAGAAGCATCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCGGG
BG605323Ln06P003B01B071R1_04.ab1      TATTCCTAGCCCCAATAGAAGCATCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCGGG
BG605323Ln07P003B01B071R1_03.ab1      TATTCCTAGCCCCAATAGAAGCATCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCGGG
BG605323Ln08P003B01B071R1_04.ab1      TATTCCTAGCCCCAATAGAAGCATCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCGGG
                                      *                                                           

BG605323As01P003B01B071R1_04.ab1      -----------------------------------------------------
BG605323Ln01P003B01B071R1_03.ab1      AGCATGCGACGTCCGGCCCAATTCGCCCTATGGTGAGTCGTA-----------
BG605323Ln03P003B01B071R1_03.ab1      AGCATGCGACATCAGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTCAC
BG605323Ln04P003B01B071R1_04.ab1      AGCATGCGACGTCGGGCCCAATTCGCCCTATAGTGAGTCGTAT----------
BG605323Tu01P003B01B071R1_03.ab1      -----------------------------------------------------
BG605323Ln02P003B01B071R1_04.ab1      AGCATGCGACGTCGGGCCCAATTCGCCCTATAGTGAGTCGTAT----------
BG605323Ln05P003B01B071R1_03.ab1      AGCATGCGACGTCGGGCCCAATTCGCCCTATAGTGAGTCGTAT----------
BG605323Ln06P003B01B071R1_04.ab1      AGCATGCGACGTCGGGCCCAATTCGCCCTATAGTGAGTCGTA-----------
BG605323Ln07P003B01B071R1_03.ab1      AGCATGCGACGTCGGGCCCAATTCGCCCTATAGTGAGTCGTA-----------
BG605323Ln08P003B01B071R1_04.ab1      AGCATGCGACGTCGGGCCCAATTCGCCCTATAGTGAGTCGTAT----------