MUSCLE (3.6) multiple sequence alignment BQ162650Ld10P067E03P067E091R1_07 --------------------------------GCC------------------------- BQ162650Ld04P067E03P067E091R1_03 ------------------TCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650Ld03P067E03P067E091R1_04 --------------TTCATCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650Ld05P067E03P067E091R1_03 --------------TTCATCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650At02P067E03P067E091R1_02 -------CTGTCAATTCGTCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650Ld06P067E03P067E091R1_03 -------CTGTCAATTCGTCAGGCACGATGCTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650Tu02P067E03P067E091R1_03 -GAGTATCTGTCAATTCGTCAGGCACGATGCTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650Tu01P067E03P067E091R1_00 --------------TTCGTCAGGCACGATGCTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650Ld07P067E03P067E091R1_06 --------------TTCATCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650Ld02P067E03P067E091R1_01 CGAGTATCTGTCAATTCATCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650Ld01P067E03P067E091R1_01 -------CTGTCAATTCATCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650As01P067E03P067E091R1_02 CGAGTATCTGTCAATTCGTCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT BQ162650As02P067E03P067E091R1_02 CGAGTATCTGTCAATTCGTCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGTAT *** BQ162650Ld10P067E03P067E091R1_07 ---CTGGCCGC------------------------------------------------- BQ162650Ld04P067E03P067E091R1_03 CCACCGACCCC----TACACCCCACAACCAAATTGAAGCTCCTGATTACGTTTCTCCTGT BQ162650Ld03P067E03P067E091R1_04 CCACCGACCCC----TACACCCCACAACCAAATTGCAGCTCCTGATTACGTTTCTCCTGT BQ162650Ld05P067E03P067E091R1_03 CCACCGACCCC----TACACCCCACAACCAAATTGAAGCTCCTGATTACGTTTCTCCTGT BQ162650At02P067E03P067E091R1_02 CCACCGACCCC----TACACCCCACAACCAAATTGAATCTCCTGATTACGTTTCTCCTAT BQ162650Ld06P067E03P067E091R1_03 CC-CCGACCTC----TACGCCCCACAACTAGATTGAAGCTCCTGATTACGTTTCTCCTGT BQ162650Tu02P067E03P067E091R1_03 CC-CCGACCTC----TACGCCCCACAACTAGATTGAAGCTCCTGATTACTTCTCTCCTGT BQ162650Tu01P067E03P067E091R1_00 CC-CCGACCTC----TACGCCCCACAACTAGATTGAAGCTCCTGATTACTTCTCTCCTGT BQ162650Ld07P067E03P067E091R1_06 CCACCGACCCC----TACACCCCACAACCAAATTGAAGCTCCTGATTACGTTTCTCCTGT BQ162650Ld02P067E03P067E091R1_01 CCACCGACCCC----TACACCCCACAACCAAATTGAAGCTCCTGATTACGTTTCTCCTGT BQ162650Ld01P067E03P067E091R1_01 CCACCGACCCC----TACACCCCACAACCAAATTGAAGCTCCTGATTACGTTTCTCCTGT BQ162650As01P067E03P067E091R1_02 CCACCGACCCCTACATACACCCCACAACCAAATTGAAGCTCCTGATTACGTTTCTGCTGT BQ162650As02P067E03P067E091R1_02 CCACCGACCCCTCCGTACACCCCACAACCAAATTGAAGCTCCTGATTACGTTTCTGCTGT * * ** * BQ162650Ld10P067E03P067E091R1_07 ------------------------------------------------CGAAGGACAGCG BQ162650Ld04P067E03P067E091R1_03 CCAAATCCATTATCTCACTATATTCTTCCAGGAATAAGCGGAAACATTCAAATGATGGCG BQ162650Ld03P067E03P067E091R1_04 CCAAATCCATTATCTCACTATATTCTTCCAGGAATAAGCGGAAACATTCAAATGATGGCG BQ162650Ld05P067E03P067E091R1_03 CCAAATCCATTATCTCACTATATTCTTCCAGGAATAAGCGGAAACATTCAAATGATGGCG BQ162650At02P067E03P067E091R1_02 TTTAACCCATCATCCCACGATGTTGTTCCAGGAATAAGCGGAAACATTCAAATGATGGCG BQ162650Ld06P067E03P067E091R1_03 TCTAATCCATTATCTCACGATGTTCTTCCAGGAACAAGCGGAAACATTCAAATGACGGCG BQ162650Tu02P067E03P067E091R1_03 TCTAATCCATTATCTCACGATGTTCTTCCAGGAACAAGCGGAAACATTCAAATGACGGCG BQ162650Tu01P067E03P067E091R1_00 TCTAATCCATTATCTCACGATGTTCTTCCAGGAACAAGCGGAAACATTCAAATGACGGCG BQ162650Ld07P067E03P067E091R1_06 CCAAATCCATTATCTCACTATATTCTTCCAGGAATAAGCGGAAACATTCAAATGATGGCG BQ162650Ld02P067E03P067E091R1_01 CCAAATCCATTATCTCACTATATTCTTCCAGGAATAAGCGGAAACATTCAAATGATGGCG BQ162650Ld01P067E03P067E091R1_01 CCAAATCCATTATCTCACTATATTCTTCCAGGAATAAGCGGAAACATTCAAATGATGGCG BQ162650As01P067E03P067E091R1_02 CCCAATCCATTATCTCACTATGTTCTTCCAGGAATAAACGGAAACATTCAAATGATGGCG BQ162650As02P067E03P067E091R1_02 CCCAATCCATTATCTCACTATGTTCTTCCAGGAATAAGCGGAAACATTCAAATGATGGCG * ** ** *** BQ162650Ld10P067E03P067E091R1_07 ACTCGTCGGA------GACCGCCACG--------------------TCGTCTCCGCCGCA BQ162650Ld04P067E03P067E091R1_03 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTACTAATGGTCTTGAATGCA BQ162650Ld03P067E03P067E091R1_04 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650Ld05P067E03P067E091R1_03 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650At02P067E03P067E091R1_02 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650Ld06P067E03P067E091R1_03 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650Tu02P067E03P067E091R1_03 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650Tu01P067E03P067E091R1_00 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650Ld07P067E03P067E091R1_06 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650Ld02P067E03P067E091R1_01 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650Ld01P067E03P067E091R1_01 AGCCTTCAGATTCGTTGAAGGCCATGGATGGTATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650As01P067E03P067E091R1_02 AGCCTTCAGATTCGTTGAAGGCCATGGATGGCATCAAAGTTGCTAATGGTCTTGAATGCA BQ162650As02P067E03P067E091R1_02 AGCCTTCAGATTCGTTGAAGGCAATGGATGGCATCAAAGTTGCTAATGGTCTTGAATGCA * * ** ** ** ** * * * **** *** BQ162650Ld10P067E03P067E091R1_07 CCGGATGATCTGGGGGAGCTGGCGGGCCGGGT----------------GAA--CCACCAT BQ162650Ld04P067E03P067E091R1_03 --AGATATAAT-CGAATTCCCGCGGCCGCCATGGC--------GGCCGGGAGCATGCGAC BQ162650Ld03P067E03P067E091R1_04 --AGATATCAATCGAATTCCCGCGGCCGCCATGGC--------GGCCGGGAGCATGCGAC BQ162650Ld05P067E03P067E091R1_03 --AGATATCAATCGAATTCCCGCGGCCGCCATGGC--------GGCCGGGAGCATGCGAC BQ162650At02P067E03P067E091R1_02 --AGATATCCTGCAAGACGTCTAAGGTACTGTATCTTTATTTAATAG-GGA--ATACCAT BQ162650Ld06P067E03P067E091R1_03 --AGATATCCTGCAAGACCTCTAAGGTACTGCATCTTTATTTAATTC-GGA--ATTCCAT BQ162650Tu02P067E03P067E091R1_03 --AGATATCCTGCAAGACCTCTAAGGTACTGCATCTTTATTTAATTC-GGA--ATTCCAT BQ162650Tu01P067E03P067E091R1_00 --AGATATCCTGCAAGACCTCTAAGGTACTGCATCTTTATTTAATTC-GGA--ATTCCAT BQ162650Ld07P067E03P067E091R1_06 --AGATATCCTGCAAGACCTCTAAGGTACTGTATCTTTATTTCATTCGGGA--ATTCCAT BQ162650Ld02P067E03P067E091R1_01 --AGATATCCTGCAAGACCTCTAAGGTACTGTATCTTTATTTCATTCGGGA--ATTCCAT BQ162650Ld01P067E03P067E091R1_01 --AGATATCCTGCAAGACCTCTAAGGTACTGTATCTTTATTTCATTCGGGA--ATTCCAT BQ162650As01P067E03P067E091R1_02 --AGATATCCTGCAAGACCTCTAAGGTACTGTATCTTCATTTAATTC-GGA--ATTCCAT BQ162650As02P067E03P067E091R1_02 --AGATATCCTGCAAGACCTCTAAGGTACTGTATCTTCATTTAATTC-GGA--ATTCCAT *** * * * * * BQ162650Ld10P067E03P067E091R1_07 CTC--------CTCCTCCTCTGTGAGGG---AGGGGAC--------------TTTGGTCG BQ162650Ld04P067E03P067E091R1_03 GTCGGGCCCAATTCGCCCT--ATAGTGA---GTCGTAT----TACAATTCACTGG----- BQ162650Ld03P067E03P067E091R1_04 GTCGGGCCCAATTCGCCCT--ATAGTGA---GTCGTAT----TACAATTCACTGGCCGTC BQ162650Ld05P067E03P067E091R1_03 GTCGGGCCCAATTCGCCCT--ATAGTGA---GTCGTAT----TACAATTCACTGGCCGTC BQ162650At02P067E03P067E091R1_02 GCG---TTCAGTTCTACCTGGATATTGT-AGACAGTATAGCTCACAATGCTATATATGCA BQ162650Ld06P067E03P067E091R1_03 GCT---TTCAGTTCTCCCTGGATATTAT---AGTATAT--CTTACAATGCCATATATGCA BQ162650Tu02P067E03P067E091R1_03 GCT---TTCAGTTCTCCCTGGATATTAT---AGTATAT--CTTACAATGCCATATATGCA BQ162650Tu01P067E03P067E091R1_00 GCT---TTCAGTTCTCCCTGGATATTAT---AGTATAT--CTTACAATGCCATATATGCA BQ162650Ld07P067E03P067E091R1_06 GCC---TTCAGTTCTACCTGGGTATTATTATAGTATATAGCTCACAATGCCATATATGCA BQ162650Ld02P067E03P067E091R1_01 GCC---TTCAGTTCTACCTGGGTATTATTATAGTATATAGCTCACAATGCCATATATGCA BQ162650Ld01P067E03P067E091R1_01 GCC---TTCAGTTCTACCTGGGTATTATTATAGTATATAGCTCACAATGCCATATATGCA BQ162650As01P067E03P067E091R1_02 GCC---TTCAGTTCTACCTGGGTATTATTACAGTATATAGCTCACAATGCCATATATGCA BQ162650As02P067E03P067E091R1_02 GCC---TTCAGTTCTACCTGGGTATTATTACAGTATATAGCTCACAATGCCATATATGCA ** *** * * * BQ162650Ld10P067E03P067E091R1_07 GGTTGGC----------------------------------------------------- BQ162650Ld04P067E03P067E091R1_03 ------------------------------------------------------------ BQ162650Ld03P067E03P067E091R1_04 GTTTTA------------------------------------------------------ BQ162650Ld05P067E03P067E091R1_03 GTTTTA------------------------------------------------------ BQ162650At02P067E03P067E091R1_02 GGTCTCCTATGTCCTTGACACCGAAGATTTCTTGTTTCGG-------------------- BQ162650Ld06P067E03P067E091R1_03 GGTCTCCTATGTCCTTGACACCGAAGATTTCTTGTTTCGGAATCACTAGTGAATTCGCGG BQ162650Tu02P067E03P067E091R1_03 GGTCTCCTATGTCCTTGACACCGAAGATTC------------------------------ BQ162650Tu01P067E03P067E091R1_00 GGTCTCCTATGTCCTTGACACCGA------------------------------------ BQ162650Ld07P067E03P067E091R1_06 GGTCTCCTATGTCCTTGACACCGAAGATTTCTTGTTTCGGAATCACTAGTGAATTCGCGG BQ162650Ld02P067E03P067E091R1_01 GGTCTCCTATGTCCTTGACACCGAAGATTTCTTGTTTCGGAATCACTAGTGAATTCGCGG BQ162650Ld01P067E03P067E091R1_01 GGTCTCCTATGTCCTTGACACCGAAGATTTCTTGTTTCGGAATCACTAGTGAATTCGCGG BQ162650As01P067E03P067E091R1_02 TG---------------------------------------------------------- BQ162650As02P067E03P067E091R1_02 GGTCTCCTATGTCCTTGACACCGAAGA--------------------------------- BQ162650Ld10P067E03P067E091R1_07 ------------------------------------------------------------ BQ162650Ld04P067E03P067E091R1_03 ------------------------------------------------------------ BQ162650Ld03P067E03P067E091R1_04 ------------------------------------------------------------ BQ162650Ld05P067E03P067E091R1_03 ------------------------------------------------------------ BQ162650At02P067E03P067E091R1_02 ------------------------------------------------------------ BQ162650Ld06P067E03P067E091R1_03 CCGCCTGCAGGTCGACCATATGGGAGAGCTCCCAACGCGTTGGATGCATAGCTTGAGTAT BQ162650Tu02P067E03P067E091R1_03 ------------------------------------------------------------ BQ162650Tu01P067E03P067E091R1_00 ------------------------------------------------------------ BQ162650Ld07P067E03P067E091R1_06 CCGCCTGCAGGTCGACCATATGGGAGAGCTCCCAACGCGTTGGATGCATAGCTTGAGTAT BQ162650Ld02P067E03P067E091R1_01 CCGCCTGCAGGTCGACCATATGGGAGAGCTCCCAACGCGTTGGATGCAT----------- BQ162650Ld01P067E03P067E091R1_01 CCGCCTGCAGGTCGACCATATGGGAGAGCTCCCAACGCGTTGGATGCATAGCTTGAGTAT BQ162650As01P067E03P067E091R1_02 ------------------------------------------------------------ BQ162650As02P067E03P067E091R1_02 ------------------------------------------------------------ BQ162650Ld10P067E03P067E091R1_07 --------------------------------------------------- BQ162650Ld04P067E03P067E091R1_03 --------------------------------------------------- BQ162650Ld03P067E03P067E091R1_04 --------------------------------------------------- BQ162650Ld05P067E03P067E091R1_03 --------------------------------------------------- BQ162650At02P067E03P067E091R1_02 --------------------------------------------------- BQ162650Ld06P067E03P067E091R1_03 TCTATAGTGTCACCTAAATAGCTTGGCGTAATCATGGTCATAGCCTGTTTC BQ162650Tu02P067E03P067E091R1_03 --------------------------------------------------- BQ162650Tu01P067E03P067E091R1_00 --------------------------------------------------- BQ162650Ld07P067E03P067E091R1_06 TCTATAGTGTCACCTAAATAGCTTGGCGTAATCATGG-------------- BQ162650Ld02P067E03P067E091R1_01 --------------------------------------------------- BQ162650Ld01P067E03P067E091R1_01 TCTATAGTGTCACCTAAATAGCTGGGCGTAATCATGGTCA----------- BQ162650As01P067E03P067E091R1_02 --------------------------------------------------- BQ162650As02P067E03P067E091R1_02 ---------------------------------------------------