MUSCLE (3.6) multiple sequence alignment BQ168655Ld10P081D05P081D111R1_08 -GCTCATAAGAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld04P081D05P081D111R1_04 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld02P081D05P081D111R1_04 -------------------------------------------------TCGTGGTAGAA BQ168655Ld05P081D05P081D111R1_04 TGCTTATAAGAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld11P081D05P081D111R1_08 TGCTCATAAGAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld12P081D05P081D111R1_08 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld01P081D05P081D111R1_03 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655At02P081D05P081D111R1_03 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Tu01P081D05P081D111R1_09 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld08P081D05P081D111R1_09 --CTCATAAGAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld09P081D05P081D111R1_09 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Tu02P081D05P081D111R1_08 -GCTCATAAGAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655As01P081D05P081D111R1_08 TGCTCATAAGAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655As02P081D05P081D111R1_08 TGCTCATAAGAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld07P081D05P081D111R1_09 TGCTCATAAGAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld06P081D05P081D111R1_04 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655Ld03P081D05P081D111R1_04 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA BQ168655At01P081D05P081D111R1_03 ---------GAGGACTGCAAGCTTCGAAGGCTCTCGGATTTGCTGCTCCTCGTGGTAGAA *********** BQ168655Ld10P081D05P081D111R1_08 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld04P081D05P081D111R1_04 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld02P081D05P081D111R1_04 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld05P081D05P081D111R1_04 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld11P081D05P081D111R1_08 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld12P081D05P081D111R1_08 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld01P081D05P081D111R1_03 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655At02P081D05P081D111R1_03 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Tu01P081D05P081D111R1_09 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld08P081D05P081D111R1_09 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld09P081D05P081D111R1_09 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Tu02P081D05P081D111R1_08 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655As01P081D05P081D111R1_08 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655As02P081D05P081D111R1_08 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld07P081D05P081D111R1_09 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld06P081D05P081D111R1_04 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655Ld03P081D05P081D111R1_04 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG BQ168655At01P081D05P081D111R1_03 ATGGACTCAGCTAGGCCACCCAGATCTCTCATGCCCAGTGGGGTGCCAGCATCGTCGGTG ************************************************************ BQ168655Ld10P081D05P081D111R1_08 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld04P081D05P081D111R1_04 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld02P081D05P081D111R1_04 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld05P081D05P081D111R1_04 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld11P081D05P081D111R1_08 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld12P081D05P081D111R1_08 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld01P081D05P081D111R1_03 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655At02P081D05P081D111R1_03 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Tu01P081D05P081D111R1_09 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld08P081D05P081D111R1_09 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld09P081D05P081D111R1_09 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Tu02P081D05P081D111R1_08 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655As01P081D05P081D111R1_08 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655As02P081D05P081D111R1_08 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld07P081D05P081D111R1_09 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld06P081D05P081D111R1_04 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655Ld03P081D05P081D111R1_04 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA BQ168655At01P081D05P081D111R1_03 GTTCTTATCACAGCCATTCTTCCCTCGTTAGCAATATCATAACTTGCTGAAGACGAGACA ************************************************************ BQ168655Ld10P081D05P081D111R1_08 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld04P081D05P081D111R1_04 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld02P081D05P081D111R1_04 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld05P081D05P081D111R1_04 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld11P081D05P081D111R1_08 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld12P081D05P081D111R1_08 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld01P081D05P081D111R1_03 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655At02P081D05P081D111R1_03 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Tu01P081D05P081D111R1_09 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld08P081D05P081D111R1_09 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld09P081D05P081D111R1_09 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Tu02P081D05P081D111R1_08 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655As01P081D05P081D111R1_08 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655As02P081D05P081D111R1_08 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld07P081D05P081D111R1_09 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld06P081D05P081D111R1_04 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655Ld03P081D05P081D111R1_04 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT BQ168655At01P081D05P081D111R1_03 TCCTCAGCTTCCATCATAATGAACCTTGCAATGCTCATAACTAACATGTTCTCAAAATTT ************************************************************ BQ168655Ld10P081D05P081D111R1_08 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGAACATCCGATAC BQ168655Ld04P081D05P081D111R1_04 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGAACATCCGATAC BQ168655Ld02P081D05P081D111R1_04 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGAACATCCGATAC BQ168655Ld05P081D05P081D111R1_04 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGAACATCCGATAC BQ168655Ld11P081D05P081D111R1_08 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGAACATCCGATAC BQ168655Ld12P081D05P081D111R1_08 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGAACATCCGATAC BQ168655Ld01P081D05P081D111R1_03 TCATCATCTCTCTGCGCATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655At02P081D05P081D111R1_03 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655Tu01P081D05P081D111R1_09 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655Ld08P081D05P081D111R1_09 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655Ld09P081D05P081D111R1_09 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655Tu02P081D05P081D111R1_08 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655As01P081D05P081D111R1_08 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655As02P081D05P081D111R1_08 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655Ld07P081D05P081D111R1_09 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655Ld06P081D05P081D111R1_04 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655Ld03P081D05P081D111R1_04 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC BQ168655At01P081D05P081D111R1_03 TCATCATCTCTCTGCACATCCTTGTAACCGTACCTGACAATGCAACGGTACATCCGATAC *************** ******************************** *********** BQ168655Ld10P081D05P081D111R1_08 GCTTTAGGGCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld04P081D05P081D111R1_04 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld02P081D05P081D111R1_04 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld05P081D05P081D111R1_04 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld11P081D05P081D111R1_08 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld12P081D05P081D111R1_08 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld01P081D05P081D111R1_03 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655At02P081D05P081D111R1_03 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGCCACTGGA BQ168655Tu01P081D05P081D111R1_09 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGCCACTGGA BQ168655Ld08P081D05P081D111R1_09 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld09P081D05P081D111R1_09 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Tu02P081D05P081D111R1_08 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655As01P081D05P081D111R1_08 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655As02P081D05P081D111R1_08 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld07P081D05P081D111R1_09 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld06P081D05P081D111R1_04 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655Ld03P081D05P081D111R1_04 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACGGCACTGGA BQ168655At01P081D05P081D111R1_03 GCTTTAGGTCCAATCCTACCAACAAGGTATCGCTCATCTGGTTGAACATACG-------- ******** ******************************************* BQ168655Ld10P081D05P081D111R1_08 AAATC-GAATTCCCGCGGCCGCCAT-GGCGGCCGGGAGCATGCGACGTCGGGCCCAATTC BQ168655Ld04P081D05P081D111R1_04 AAATC-GAATTCCCGCGGCCGCCATGGGCGGCCGGAAGCATGCGACGTCGGGCCCAATTC BQ168655Ld02P081D05P081D111R1_04 AATC--GAATTCCCGCGGCCGCCAT-GGCGGCCGGGAGCATGCGACGTCGGGCCCAATTC BQ168655Ld05P081D05P081D111R1_04 AAATC-GAATTCCCGCGGCCGCCAT-GGCGGCCGGGAGCATGCGACGTCGGGCCCAATTC BQ168655Ld11P081D05P081D111R1_08 AAATCACTAGTGAATTCGCGGCCGC-CTGCAGGTCGACCATATGGGAGAGCTCCCAACGC BQ168655Ld12P081D05P081D111R1_08 AAATCACTAGTGAATTCGCGGCCGC-CTGCAGGTCGACCATATGGGAGAGCTCCCAACGC BQ168655Ld01P081D05P081D111R1_03 AAATC-GAATTCCCGCGGCCGCCAT-GGCGGCCGGGAGCATGCGACGTCGGGCCCAATTC BQ168655At02P081D05P081D111R1_03 ------------------------------------------------------------ BQ168655Tu01P081D05P081D111R1_09 ------------------------------------------------------------ BQ168655Ld08P081D05P081D111R1_09 AATCA-CTAGTGAATTCGCGGCCGC-CTGCAGGTCGACCATATGGGAGAGCTCCCAACGC BQ168655Ld09P081D05P081D111R1_09 AATCA-CTAGTGAATTCGCGGCCGC-CTGCAGGTCGACCATATGGGAGAGCTCCCAACGC BQ168655Tu02P081D05P081D111R1_08 ------------------------------------------------------------ BQ168655As01P081D05P081D111R1_08 ------------------------------------------------------------ BQ168655As02P081D05P081D111R1_08 ------------------------------------------------------------ BQ168655Ld07P081D05P081D111R1_09 AAATC-GAATTCCCGCGGCCGCCAT-GGCGGCCGGGAGCATGCGACGTCGGGCCCAATTC BQ168655Ld06P081D05P081D111R1_04 AAATC-GAATTCCCGCGGCCGCCAT-GGCGGCCGGGAGCATGCGACGTCGGGCCCAATTC BQ168655Ld03P081D05P081D111R1_04 AAATC-GAATTCCCGCGGCCGCCAT-GGCGGCCGGGAGCATGCGACGTCGGGCCCAATTC BQ168655At01P081D05P081D111R1_03 ------------------------------------------------------------ BQ168655Ld10P081D05P081D111R1_08 GCCCTATAGTGAGTCGTATTACAATTCACTGGCC------------------------- BQ168655Ld04P081D05P081D111R1_04 GCCCTATAGTGAGTCGTATTACAATTCACTGGCC------------------------- BQ168655Ld02P081D05P081D111R1_04 GCCCTATAGTGAGTCGTATTACAATT--------------------------------- BQ168655Ld05P081D05P081D111R1_04 GCCCTATAGTGAGTCGTATTACAATTCACTGGC-------------------------- BQ168655Ld11P081D05P081D111R1_08 GTTGGATGCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATGG BQ168655Ld12P081D05P081D111R1_08 GTTGGATGCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG- BQ168655Ld01P081D05P081D111R1_03 GCCCTATAGTGAGTCGTATTACAATTCACTGGC-------------------------- BQ168655At02P081D05P081D111R1_03 ----------------------------------------------------------- BQ168655Tu01P081D05P081D111R1_09 ----------------------------------------------------------- BQ168655Ld08P081D05P081D111R1_09 GTTGGATGCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCAT-- BQ168655Ld09P081D05P081D111R1_09 GTTGGATGCATAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATGG BQ168655Tu02P081D05P081D111R1_08 ----------------------------------------------------------- BQ168655As01P081D05P081D111R1_08 ----------------------------------------------------------- BQ168655As02P081D05P081D111R1_08 ----------------------------------------------------------- BQ168655Ld07P081D05P081D111R1_09 GCCCTATAGTGAGTCGTATTACAATTCACT----------------------------- BQ168655Ld06P081D05P081D111R1_04 GCCCTATAGTGAGTCGTATTACAATTCACTGG--------------------------- BQ168655Ld03P081D05P081D111R1_04 GCCCTATAGTGAGTCGTATTACAATTCACTGGCC------------------------- BQ168655At01P081D05P081D111R1_03 -----------------------------------------------------------