MUSCLE (3.6) multiple sequence alignment BQ169729Ld08P081F05P081F111M1 ------------------------------------------------------------ BQ169729Ld09P081F05P081F111M1 ------------------------------------------------------------ BQ169729Ld11P081F05P081F111M1 ------------------------------------------------------------ BQ169729Ld10P081F05P081F111C1 ---------------TAAAACGGACGGCCAGTGAATTGTAATACGACTCACTATAGGGCG BQ169729At02P081F05P081F111C1 ------------------------------------------------------------ BQ169729At01P081F05P081F111C1 ------------------------------------------------------------ BQ169729As01P081F05P081F111C1 ------------------------------------------------------------ BQ169729As02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Tu02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Tu01P081F05P081F111C1 ------------------------------------------------------------ BQ169729Ld02P081F05P081F111C1 CATGATTACGCCAAGCTATTTAGGTGACACTATAGAATACTCAAGCTATGCATCCAACGC BQ169729Ld08P081F05P081F111M1 -------------------------------------------------TGTGCTGAGAG BQ169729Ld09P081F05P081F111M1 --------------GATGATCCGTTGCATTGTCAGGTACGGTTACAGGATGTGCAGAGAG BQ169729Ld11P081F05P081F111M1 -------------------------------------------------TGTGCAGAGAG BQ169729Ld10P081F05P081F111C1 AATTGGGCCCGACGTCGCATGCTCCCGGCCGCCATGGCGGCCGCGGGAATTCGATTGCCG BQ169729At02P081F05P081F111C1 --------------------------------------------------------GCCG BQ169729At01P081F05P081F111C1 ----------------------------------------------------------CG BQ169729As01P081F05P081F111C1 ------------------------------------------------------CTGCCG BQ169729As02P081F05P081F111C1 ---------------------------------------------------------CCG BQ169729Tu02P081F05P081F111C1 ----------------------------------------------------------CG BQ169729Tu01P081F05P081F111C1 -------------------------------------------------------TGCCG BQ169729Ld02P081F05P081F111C1 GTTGGGAGCTCTCCCATATGGTCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTGCCG * BQ169729Ld08P081F05P081F111M1 ATGATGAAGATTTTGTGAACATGTTGTT-----------TATGTAGCATCGCAAGG---- BQ169729Ld09P081F05P081F111M1 ATGATGAAAATTTTGAGAACATGTTAGTTATGAGCATTGCAAGGTTCATTATGATGGAGG BQ169729Ld11P081F05P081F111M1 ATGATGAAAATTTTGAGAACATGTTAGTTATGAGCATTGCAAGGTTCATTATGATGGAAG BQ169729Ld10P081F05P081F111C1 CTGATGAAGTAGAAGGGGCCGGGGCGGT-----------CGAGGCGCACCTCGGTG---- BQ169729At02P081F05P081F111C1 CTGATGAAGTAGAAGGGGCCCGGGCGGT-----------CCAGGCGCACCTCGGTG---- BQ169729At01P081F05P081F111C1 CTGATGAAGTAGAAGGGGCCCGGGCGGT-----------CCAGGCGCACCTCGGTG---- BQ169729As01P081F05P081F111C1 CTGATGAAGTAGAAGGGGCCCGGGCGGT-----------CCAGGCGCACCTCGGTG---- BQ169729As02P081F05P081F111C1 CTGATGAAGTAGAAGGGGCCCGGGCGGT-----------CCAGGCGCACCTCGGTG---- BQ169729Tu02P081F05P081F111C1 CTGATGAAGTAGAAGGGGCCCGGGCGGT-----------CCAGGCGCACCTCGGTG---- BQ169729Tu01P081F05P081F111C1 CTGATGAAGTAGAAGGGGCCCGGGCGGT-----------CCAGGCGCACCTCGGTG---- BQ169729Ld02P081F05P081F111C1 CTGATGAAGTAGAAGGGGCCCGGGCGGT-----------CCAGGCGCACCTCGGTG---- ******* * * * * * * ** * BQ169729Ld08P081F05P081F111M1 ------------TGCTTT------------ATGATG-------GAGGCTGA--------- BQ169729Ld09P081F05P081F111M1 CTGAGGATGTCTCGTCTTCAGCAAGTTATGATATTGCTAACGAGGGAAGAATGGCTGTGA BQ169729Ld11P081F05P081F111M1 CTGAGGATGTCTCGTCTTCAGCAAGTTATGATATTGCTAACGAGGGAAGAATGGCTGTGA BQ169729Ld10P081F05P081F111C1 -----------TTGCCGT-------------TGTTG-------GAGAAGAA-------GA BQ169729At02P081F05P081F111C1 -----------TCGCCGT-------------TGTTG-------GAGAAGAA-------GA BQ169729At01P081F05P081F111C1 -----------TCGCCGT-------------TGTTG-------GAGAAGAA-------GA BQ169729As01P081F05P081F111C1 -----------TCGCCGT-------------TGTTG-------GAGAAGAA-------GA BQ169729As02P081F05P081F111C1 -----------TCGCCGT-------------TGTTG-------GAGAAGAA-------GA BQ169729Tu02P081F05P081F111C1 -----------TCGCCGT-------------TGTTG-------GAGAAGAA-------GA BQ169729Tu01P081F05P081F111C1 -----------TCGCCGT-------------TGTTG-------GAGAAGAA-------GA BQ169729Ld02P081F05P081F111C1 -----------TCGCCGT-------------TGTTG-------GAGAAGAA-------GA * * * ** * * * BQ169729Ld08P081F05P081F111M1 --GGAGGTCTCGTC----------TTCAGCAAGTTATGANNNNNNNNNNATTCC------ BQ169729Ld09P081F05P081F111M1 TAAGAACCACCGACGATGCTGGCACCCCACTGGGCATGAGAGATCTGGGTGGCCTAGCTG BQ169729Ld11P081F05P081F111M1 TAAGAACCACCGACGATGCTGGCACCCCACTGGGCATGAGAGATCTGGGTGGCCTAGCTG BQ169729Ld10P081F05P081F111C1 TCGGGTCCGACGAC----------TCGCACTTGTTGTACCCCTCCTCCGTCACC------ BQ169729At02P081F05P081F111C1 TGGGGTGCGTCGAC----------CCGCACTTGTCGTACTCCTCCTGCGTCACC------ BQ169729At01P081F05P081F111C1 TGGGGTGCGTCGAC----------CCGCACTTGTCGTACTCCTCCTGCGTCACC------ BQ169729As01P081F05P081F111C1 TGGGGTGCGTCGAC----------CCGCACTTGTCGTACTCCTCCTGCGTCACC------ BQ169729As02P081F05P081F111C1 TGGGGTGCGTCGAC----------CCGCACTTGTCGTACTCCTCCTGCGTCACC------ BQ169729Tu02P081F05P081F111C1 TGGGGTGCGTCGAC----------CCGCACTTGTCGTACTCCTCCTGCGTCACC------ BQ169729Tu01P081F05P081F111C1 TGGGGTGCGTCGAC----------CCGCACTTGTCGTACTCCTCCTGCGTCACC------ BQ169729Ld02P081F05P081F111C1 TGGGGTGCGTCGAC----------CCGCACTTGTCGTACTCCTCCTGCGTCACC------ * ** * * * * ** BQ169729Ld08P081F05P081F111M1 ----------------------CATTAAG-----------------CTTGGAAAACAG-- BQ169729Ld09P081F05P081F111M1 AGTCCATTTCTACCACGAGGAGCACCAAATCCGAGAGCCTTCTAAGCTGGCAGTCCTC-- BQ169729Ld11P081F05P081F111M1 AGTCCATTTCTACCACGAGGAGCAGCAAATCCGAGAGCCTTCGAAGCTTGCAGTCCTC-- BQ169729Ld10P081F05P081F111C1 --ACCAT---------------CACCGAGTCC----TGATTGTA--CTTGAAATCTATGC BQ169729At02P081F05P081F111C1 --TCCAT---------------CACCGAGTCC----GCCTTGTA--CTTGAAATCTAC-- BQ169729At01P081F05P081F111C1 --TCCAT---------------CACCGAGTCC----GCCTTGTA--CTTGAAATCTAC-- BQ169729As01P081F05P081F111C1 --TCCAT---------------CACCGAGTCC----GCCTTGTA--CTTGAAATCTAC-- BQ169729As02P081F05P081F111C1 --TCCAT---------------CACCGAGTCC----GCCTTGTA--CTTGAAATCTAC-- BQ169729Tu02P081F05P081F111C1 --TCCAT---------------CACCGAGTCC----GCCTGGTA--CTTGAAATCTAC-- BQ169729Tu01P081F05P081F111C1 --TCCAT---------------CACCGAGTCC----GCCTTGTA--CTTGAAATCTAC-- BQ169729Ld02P081F05P081F111C1 --TCCAT---------------CACCGAGTCC----GCCTTGTA--CTTGAAATCTAC-- ** * ** * * BQ169729Ld08P081F05P081F111M1 ------------------------------------------------------------ BQ169729Ld09P081F05P081F111M1 TTATGAGCAGGAATCACCGAGTGCAGGTCGGANNNNNNNNN------------------- BQ169729Ld11P081F05P081F111M1 TTATGAGCAGGAATCACCGAGTGCAGGCCGGAGGCGCCGTGTTCGCTACGAGCTGCCGAA BQ169729Ld10P081F05P081F111C1 ACGCAAGCACGATC---------------------------------------------- BQ169729At02P081F05P081F111C1 -------CGTCGAT---------------------------------------------- BQ169729At01P081F05P081F111C1 -------CACCAAT---------------------------------------------- BQ169729As01P081F05P081F111C1 -------CATCAAT---------------------------------------------- BQ169729As02P081F05P081F111C1 -------CATCAAT---------------------------------------------- BQ169729Tu02P081F05P081F111C1 -------CATCAAT---------------------------------------------- BQ169729Tu01P081F05P081F111C1 -------CATCAAT---------------------------------------------- BQ169729Ld02P081F05P081F111C1 -------CATCAAT---------------------------------------------- BQ169729Ld08P081F05P081F111M1 ------------------------------------------------------------ BQ169729Ld09P081F05P081F111M1 ------------------------------------------------------------ BQ169729Ld11P081F05P081F111M1 TGAGAATCGAATTCCCGCGGCCGCCATGGCGGCCGGGAGCATGCGACGTCGGGCCCAATT BQ169729Ld10P081F05P081F111C1 ------------------------------------------------------------ BQ169729At02P081F05P081F111C1 ------------------------------------------------------------ BQ169729At01P081F05P081F111C1 ------------------------------------------------------------ BQ169729As01P081F05P081F111C1 ------------------------------------------------------------ BQ169729As02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Tu02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Tu01P081F05P081F111C1 ------------------------------------------------------------ BQ169729Ld02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Ld08P081F05P081F111M1 ------------------------------------------------------------ BQ169729Ld09P081F05P081F111M1 -------------------------------------------------------NAGCT BQ169729Ld11P081F05P081F111M1 CGCCCTATAGTGAGTCGGATTACAATTCACTGNNNNNNNNNNTCGATTCCCATTAAAGCT BQ169729Ld10P081F05P081F111C1 ------------------------------------------------------------ BQ169729At02P081F05P081F111C1 ------------------------------------------------------------ BQ169729At01P081F05P081F111C1 ------------------------------------------------------------ BQ169729As01P081F05P081F111C1 ------------------------------------------------------------ BQ169729As02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Tu02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Tu01P081F05P081F111C1 ------------------------------------------------------------ BQ169729Ld02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Ld08P081F05P081F111M1 ----------CCTCTTCATGGATCAGGGAAGACAGTTCA-ATATCAGG----AGCATAAG BQ169729Ld09P081F05P081F111M1 TGGAAAACAGCCTCTTCATGGATCAGGGAAGATGGTTCA-ATATCAGG----GGCGTAAG BQ169729Ld11P081F05P081F111M1 TGGAAAACAGCCTCTTCATGGATCAGGGAAGACGGTTCA-ATATCAGG----AGCATAAG BQ169729Ld10P081F05P081F111C1 ----------ACGCCACATACAAAA---AAAACAATT-----------TATCAACCAAGA BQ169729At02P081F05P081F111C1 ----------CCATCACATGCATTT---CGTAC--------------GTGTTAACAAAGG BQ169729At01P081F05P081F111C1 ----------CCATCACATGCATTA---C------------------GTGTTAACAAAGG BQ169729As01P081F05P081F111C1 ----------CCGTCACACGCATCA---CATATTATTCACATATCAAGTGTCGACAGAGG BQ169729As02P081F05P081F111C1 ----------CCGTCACACGCATCA---CATATTATTCACATATCAAGTGTCGACAGAGG BQ169729Tu02P081F05P081F111C1 ----------CCATCACACGCATCA---CATATTATTCACATATCAAGTGTCAACAAAGG BQ169729Tu01P081F05P081F111C1 ----------CCATCACACGCATCA---CATATTATTCACATATCAAGTGTCAACAAAGG BQ169729Ld02P081F05P081F111C1 ----------CCATCACACGCATCA---CATATTATGCACATATCAAGTGTCAACAAAGG * ** * * * BQ169729Ld08P081F05P081F111M1 TGTGCTTATGGATTGGAGGGATCAGATTTTCCGCTTCAACAGTTGGGGCAGGCACTCGCT BQ169729Ld09P081F05P081F111M1 TGTGCTTACGGATTGGAGGAATCAGATTCTCCGCTTCAACAGTTGGGGCAGGCACTCGCT BQ169729Ld11P081F05P081F111M1 TATGCTTACGGATTGGAGGAATCAGATTCTCCGCTTCAAGAGTTGGGGCAGGCACTCGCT BQ169729Ld10P081F05P081F111C1 TGTC-----------GGTAGATCA--------ACGACGGTGGGTGGG------------- BQ169729At02P081F05P081F111C1 CGTATCGATCGGGTGGATGGATCA-------------AACGAGCGGGTCGAGTGAGTCGA BQ169729At01P081F05P081F111C1 CGTATCGATCTGGCGGATGGATCA-------------AAGGAGCGGGTCGAGTGGATCGA BQ169729As01P081F05P081F111C1 CGTACCGATCGGGCGGATGGATCA-------------AACGAGCGGG------------- BQ169729As02P081F05P081F111C1 CGTACCGATCGGGCGGATGGATCA-------------AACGAGCGGG------------- BQ169729Tu02P081F05P081F111C1 CGTA-----AGATCGGGCGGATCA-------------AACGAGCGGG------------- BQ169729Tu01P081F05P081F111C1 CGTA-----CGATCGGGCGGATCA-------------AACGAGCGGG------------- BQ169729Ld02P081F05P081F111C1 CGTA-----CGATCGGGCGGATCA-------------AACGAGCGGG------------- * * **** *** BQ169729Ld08P081F05P081F111M1 TGTTTTGATCATTATATTGCGCTTGATAATGCGTCAAATCTGCCTCTTCAGCTAGCTGGC BQ169729Ld09P081F05P081F111M1 TGTTTTGATTATTTTATTGCGCTTGATAGTGCATCAAATCTGCCTCTTCAGCTAGCTGGC BQ169729Ld11P081F05P081F111M1 TGTTCTGATCGTTGTATTGCGCTTGATAATGCGTCAAATCTGCCTCTTCAGCTAATTGGC BQ169729Ld10P081F05P081F111C1 TCTTACGGACGATG--------------------------------------TCGCCGAC BQ169729At02P081F05P081F111C1 TCTTACGGACGCTG--------------------------------------TCGCCGAC BQ169729At01P081F05P081F111C1 TCTTACGGACGCTG--------------------------------------TCGCCGAC BQ169729As01P081F05P081F111C1 ACTTACGGACGCTG--------------------------------------TCGCCGAC BQ169729As02P081F05P081F111C1 ACTTACGGACGCTG--------------------------------------TCGCCGAC BQ169729Tu02P081F05P081F111C1 CCTTACGGACGCTG--------------------------------------TCGCCGAC BQ169729Tu01P081F05P081F111C1 CCTTACGGACGCTG--------------------------------------TCGCCGAC BQ169729Ld02P081F05P081F111C1 CCTTACGGACGCTG--------------------------------------TCGCCGAC ** * * * * * BQ169729Ld08P081F05P081F111M1 AAGCCAGAGGGCGCACTGCACGGTTTATGGAGGATAATCACTATTGAATTCGCGGCCGCC BQ169729Ld09P081F05P081F111M1 AAGCCAGAGGGCGCACTGCACGGTTTATGGAGGATAATCACTAGTGAATTCGCGGCCGCC BQ169729Ld11P081F05P081F111M1 AAGCCAGAGGGCGCACTGCACGGTTTATGGAGGATAATCACTAGTGAATTCGCGGCCGCC BQ169729Ld10P081F05P081F111C1 GAGGAAG-------------CGGTTCTTG------AATCACTAGTGAATTCGCGGCCGCC BQ169729At02P081F05P081F111C1 GAGGAAG-------------CGGTTCTTGAAA---------------------------- BQ169729At01P081F05P081F111C1 GAGGAAG-------------CGGTTCT--------------------------------- BQ169729As01P081F05P081F111C1 GAGGAAG-------------CGGTTCT--------------------------------- BQ169729As02P081F05P081F111C1 GAGGAAG-------------CGGTTCTT-------------------------------- BQ169729Tu02P081F05P081F111C1 GAGGAAG-------------CGGTTCT--------------------------------- BQ169729Tu01P081F05P081F111C1 GAGGAAG-------------CGGTTCTT-------------------------------- BQ169729Ld02P081F05P081F111C1 GAGGAAG-------------CGGTTCTTGAATCGAATTCCCGCG-------GCCGCCATG ** ** ***** BQ169729Ld08P081F05P081F111M1 TGCAGGTCAACCATATGGGAGAGCTCCCAACGCGTTGGATGCATAGCTTGAGTATTCTAT BQ169729Ld09P081F05P081F111M1 TGCAGGTCGACCATATGGGAGAGCTCCCAACGCGTTGGATGCATAGCTAGAGTATTCTAT BQ169729Ld11P081F05P081F111M1 TGCAGGTCGACCATATGGGAGAGCTCCCAACGCGTTGGATGCATAGCTTGAGTATTCTAT BQ169729Ld10P081F05P081F111C1 TGCAGGTCGACCATATGGGAGAGCTCCCAACGCGTTGGATGCATAGCTTGAGTATTCTAT BQ169729At02P081F05P081F111C1 ------------------------------------------------------------ BQ169729At01P081F05P081F111C1 ------------------------------------------------------------ BQ169729As01P081F05P081F111C1 ------------------------------------------------------------ BQ169729As02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Tu02P081F05P081F111C1 ------------------------------------------------------------ BQ169729Tu01P081F05P081F111C1 ------------------------------------------------------------ BQ169729Ld02P081F05P081F111C1 GCGGCCGGGAGCATGCGACGTCGGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTC BQ169729Ld08P081F05P081F111M1 AGTGTCA-------------------------- BQ169729Ld09P081F05P081F111M1 A-------------------------------- BQ169729Ld11P081F05P081F111M1 AGTG----------------------------- BQ169729Ld10P081F05P081F111C1 AGTGTCACCTAAATAGCTTGGCGTAATCATGGT BQ169729At02P081F05P081F111C1 --------------------------------- BQ169729At01P081F05P081F111C1 --------------------------------- BQ169729As01P081F05P081F111C1 --------------------------------- BQ169729As02P081F05P081F111C1 --------------------------------- BQ169729Tu02P081F05P081F111C1 --------------------------------- BQ169729Tu01P081F05P081F111C1 --------------------------------- BQ169729Ld02P081F05P081F111C1 ACTGGCCGTTCGTTTTA----------------