MUSCLE (3.6) multiple sequence alignment


CD373557Tu01P067C03P067C091R1_01      GCAGCTCAGATTATTTATAGTTTTATGCACCAATGTTTTGCAATGC-CAGCTCATTACTT
CD373557Tu02P067C03P067C091R1_01      -----------TATTTATAGTTTTATGCACCAATGTTTTGCAATGC-CAGCTCATTACTT
CD373557As01P067C03P067C091R1_01      -------------TTTATAGTTTTACGCATCAACGTTTTGCGATGCGCAGCTCGTTACTT
CD373557As01P067C03P067C091R1_03      ----CTCAGATTATTTATAGTTTTACGCATCAACGTTTTGCAATGC-CAGCTCGTTACTT
CD373557As02P067C03P067C091R1_03      ------------------------------------------------------------
CD373557At01P067C03P067C091R1_03      ------------------------------------------------------------
CD373557At02P067C03P067C091R1_03      ------------------------------------------------------------
                                                                                                  

CD373557Tu01P067C03P067C091R1_01      AATTACTAGAGCATATATTTTAAAATTCAACTTTGGAATCTA-TTCAAGTC--TTGACTC
CD373557Tu02P067C03P067C091R1_01      AATTACTAGAGCATATATTTTAAAATTCAACTTTGGAATCTA-TTCAAGTC--TTGACTC
CD373557As01P067C03P067C091R1_01      AATTACTAGTGCATATGTCTTAAAATTCAACTTTGGAACCTA-TTCAAGTC--TTGACTC
CD373557As01P067C03P067C091R1_03      AATTACTAGTGCATATATTTTAAAATTCAACTTTGGAACCTA-TTCAAGTC--TTGACTC
CD373557As02P067C03P067C091R1_03      ------------------------TCTCAACTTTGGAACCTAGTTCTAGCTCATTGACTC
CD373557At01P067C03P067C091R1_03      -----------------------AATTTAAATTTGGAATCTA-TTCAAGTC--TTGAGTC
CD373557At02P067C03P067C091R1_03      AATTACTAGAAGACCTATATTACAATTTAAATTTGGAATCTA-TTCAAGAC--TTGAGTC
                                                                * ** ******* *** *** **    **** **

CD373557Tu01P067C03P067C091R1_01      ATGCATGACATATTTGGGTAGCTCTGCAGTGCTACGTATATTTTCAACACACTTGCTCCA
CD373557Tu02P067C03P067C091R1_01      ATGCATGACATATTTGGGTAGCTCTGCAGTGCTACGTATATTTTCAACACACTTGCTCCA
CD373557As01P067C03P067C091R1_01      AGGCATGACATATTTGGGTAGCTCTTCAATGCTACCTATATGTTCAACACGCTTGCTCCA
CD373557As01P067C03P067C091R1_03      ATGCATGACATATTTGGGTAGCTCTTCAGTGCTACGTATATTTTCAACACACTTGCTCCA
CD373557As02P067C03P067C091R1_03      AGGCATGACATATTTGGGTAGCTCTTCAAAGCTACCTATATTTTCAACACGCTTGCTCCA
CD373557At01P067C03P067C091R1_03      ATGCGTGACATATTTGGGTAGCTCTTCAGTGCTACG-ATATTTTCAACACACTTGCTCCA
CD373557At02P067C03P067C091R1_03      ATGCGTGACATATTTGGGTAGCTCTTCAGTGCTACG-ATATTTTCAACACACTTGCTCCA
                                      * ** ******************** **  *****  **** ******** *********

CD373557Tu01P067C03P067C091R1_01      ATTGTTTGAGCATGTGGGGGATCAATTAAATTAGTGCATCTTCATTTTTTGGCAACTTTA
CD373557Tu02P067C03P067C091R1_01      ATTGTTTGAGCATGTGGGGGATCAATTAAATTAGTGCATCTTCATTTTTTGGCAACTTTA
CD373557As01P067C03P067C091R1_01      ATTGTTTGAGCATGTGGGGGATCAATTAAATTAGAGCATCTTCATTTTTTGGTGACTTTA
CD373557As01P067C03P067C091R1_03      ATTGTTTGAGCATGTGGGGGATCAATTAAATTAGTGCATCTTCATTTTTTGGTAACTTTA
CD373557As02P067C03P067C091R1_03      ATTGTTTGAACATGTGGGGGATCAATTAAATTAGAGCATCTTCATTTTTTGGTGACTTTA
CD373557At01P067C03P067C091R1_03      ATTGTTTGAGCATGTGGGGGATCAATTAAATTAGTGTCTCTTCATTTTTTGGCAACTTTA
CD373557At02P067C03P067C091R1_03      ATTGTTTGAGCATGTGGGGGATCAATTAAATTAGTGCCACTTCATTTTTAGGCAACTTTA
                                      ********* ************************ *   ********** **  ******

CD373557Tu01P067C03P067C091R1_01      ATTAGCCAATCCACGCCCTGCTGCCTGTATCTTGTAGTAAATGCCTGGGATTCTGCCACC
CD373557Tu02P067C03P067C091R1_01      ATTAGCCAATCCACGCCCTGCTGCCTGTATCTTGTAGTAAATGCCTGGGATTCTGCCACC
CD373557As01P067C03P067C091R1_01      ATTAGCCAATCCATGCCCTGCTGCCTGTATCTGGAACTAAATGCCTGGGATTCGGCCACC
CD373557As01P067C03P067C091R1_03      ATTAGCCAATCCATGCCCTGCTGCCTGTATCTTGTAGTAAATGCCTGGGATTCGGCCACC
CD373557As02P067C03P067C091R1_03      ATTAGCCAATCCATGCCCTGCTGCCTGTATCTGGAACTAAATGCCTGGGATTCGGCCACC
CD373557At01P067C03P067C091R1_03      ATTAGCCAATCCACGCCCTGCTGCCTGTATCTTGGAGTAAATGCGTGGGATTCGGTCACC
CD373557At02P067C03P067C091R1_03      ATTAGCCAATCCGCGCCCTGGTGCCTGTATCTAGTATTAAATGCGTGGGATTCGGTCACC
                                      ************  ****** *********** * * ******* ******** * ****

CD373557Tu01P067C03P067C091R1_01      CACAGGCTAATTGCACCTCG-GACGTTAGATGCAAAGCTTGTTACAATTATGGACACATG
CD373557Tu02P067C03P067C091R1_01      CACAGGCTAATTGCACCTCG-GACGTTAGATGCAAAGCTTGTTACAATTATGGACACATG
CD373557As01P067C03P067C091R1_01      CACAGGCTAATTGCACCTCG-GACGTTAGATGCAGAGCTTGTTA-AATTATGGACACGCG
CD373557As01P067C03P067C091R1_03      CACAGGCTAATTGCACCTCG-GACGTTAGATGCAAAGCTTGTTACAATTATGGACACGCG
CD373557As02P067C03P067C091R1_03      CACAGGCTAATTGCACCTCGCCACGTTAAATGCAAAGCTTGTTACAATTATGGACACGCG
CD373557At01P067C03P067C091R1_03      CACAGGCTAATTGCACCTCG-GACGTTAGATGCAAAGCTAGTTACAATTATGGACACGTG
CD373557At02P067C03P067C091R1_03      CGCCTGCTAATTGCACCTCG-GACGTTACATGCAAAGATCGTTACAATTATGGACACGTG
                                      * *  ***************  ****** ***** ** * **** ************  *

CD373557Tu01P067C03P067C091R1_01      ACCCTATCCTTTCTAATAATTGTACCTCGG-ATTACCTTGAGCAAGCATGCTGCCGCCGC
CD373557Tu02P067C03P067C091R1_01      ACCCTATCCTTTCTAATAATTGTACCTCGG-ATTACCTTGAGCAAGCATGCTGCCGCCGC
CD373557As01P067C03P067C091R1_01      ACCCTGTCCTTTC---TAATTGCACCTCGATATTACCTTGAGCAAGCATGCTGCCTCCGC
CD373557As01P067C03P067C091R1_03      ACCCTGTCCTTTC---TAATTGCACCTCGG-ATTACCTTGAGCAAGCATGCTGCCGCCGC
CD373557As02P067C03P067C091R1_03      ACCCTGTCCTTTC---TAATTGCACCTCAT-ATTACCTTGAGCAAGCATGCTGCCGCCGC
CD373557At01P067C03P067C091R1_03      ACCCTATCCTTTC---TAATTGCACCTCGG-ATTACCTTGAGCAATCATGCTGCCGCCGC
CD373557At02P067C03P067C091R1_03      ACCCTGTCCTTTC---TAATTGCACCTCCG-ATTACCTTGAGCAAGGATGCTGGCGCCGC
                                      ***** *******   ****** *****   **************  ****** * ****

CD373557Tu01P067C03P067C091R1_01      TCACCCATTAGCTTGCCCTGCTGCTCA---------------------------------
CD373557Tu02P067C03P067C091R1_01      TCACCCATTAGCTTGCCCTGCTGCTCACCCATTAGCT-----------------------
CD373557As01P067C03P067C091R1_01      TTGCCCATTTGCTTGCCCTGCCGCTCACACTCTTGCTGCAAATAGAGAAGAAAGGAGCGC
CD373557As01P067C03P067C091R1_03      TTGCCCATTTGCTTGCCCTGCCGCTCACACTCTTGCTGCAGATAGAGAAGAAAGGAGCGG
CD373557As02P067C03P067C091R1_03      TTGCCCATTTGCTTGCCCTGCCGCTCACACTCTTGCTGCAGATAGAGAAGAAAGGAGCGG
CD373557At01P067C03P067C091R1_03      TTGCCCATTAGCTTGCCCTGCCGCTCACACTCTTGCTGCAGACAGAGAATAAACGAGCGG
CD373557At02P067C03P067C091R1_03      TCGCCCATTAGCTAGCCCTGCCGCTCACACTCTTGCTGCATACACAGAAGAAAGGAGCGG
                                      *  ****** *** ******* *****                                 

CD373557Tu01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557Tu02P067C03P067C091R1_01      -----------------------------------------------------TGCCCT-
CD373557As01P067C03P067C091R1_01      GCAGGGCGAGAGGTGAGAGGAAATCCCTGTGAGAAAAAGCGGAGATNAGGCACTGACCTA
CD373557As01P067C03P067C091R1_03      GCAGGGCGAGAGGTGAGAGGAAATCCCTGGGAGAGAAAGCGGAGATAAGGCACTGACCTA
CD373557As02P067C03P067C091R1_03      GCAGGGCGACAGGTGAGAGGAAATCCCTGGGAGAGAAAGCGGAGATAAGGCACTGACCTA
CD373557At01P067C03P067C091R1_03      GCAGGGTGAGAGGTGAGAGGAAATCCCTGGGAGAGAAAGAGGAGATAAGGCACTGACCTA
CD373557At02P067C03P067C091R1_03      GCAGGGTGAGAGGTGAGAGGAAATCCCTGGGAGAGAAAGAGGAGATAAGGCACTGACCTA
                                                                                                  

CD373557Tu01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557Tu02P067C03P067C091R1_01      -----GCTGCTCA-CCCATTAGCTTGCCCTGCCGCTCACACTCTTGCTGCAGACAGA---
CD373557As01P067C03P067C091R1_01      GTGTCGTCGCTCG-CTAAGTGATACACTCTGCTGTAGCTCCGTGCGCGGCCGCCAAAGCC
CD373557As01P067C03P067C091R1_03      GTGTCGTCGCTCG-CTAAGTGATACACTCTGCTGTAGCTCCGTGCGCGGCCGCCAAAGCC
CD373557As02P067C03P067C091R1_03      GTGTCGTCGCTCG-CTAAGTGATACACTCTGCTGTAGCTCCGTGCGCGGCCGCCAAAGCC
CD373557At01P067C03P067C091R1_03      ACGTCGTCGATCGACTAAGTGATACGCTCTGCTGTAGCTCTGTGTGCGGCCGCCAAAGTC
CD373557At02P067C03P067C091R1_03      GCGTCGTCGCTCG-CTAAGTGATACGCTCTGCTGTAGCTCTGTGTGCGGCCGCCCTAGTC
                                                                                                  

CD373557Tu01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557Tu02P067C03P067C091R1_01      ------------------------------------------------------------
CD373557As01P067C03P067C091R1_01      A-CAGCCAGGGATTAGCGAGAGAGACGGGATCGATGTGGCTGGGTTA-TACATG------
CD373557As01P067C03P067C091R1_03      A-CAGCCAGGGATTAGCGAGAGAGACGGGATCGATGTGGCTGGGTTATTACATGAGATAA
CD373557As02P067C03P067C091R1_03      A-CAGCCAGGGATTAGCGAGAGAGACGGGATCGATGTGGCTGGGTTATTACATGAGATAA
CD373557At01P067C03P067C091R1_03      ACCAGCCAGGTATATACGAGAGAGACGGGATCGGTGTGGCTGGGTTATTACATGAGATAA
CD373557At02P067C03P067C091R1_03      A-CTACAAGGGATTAGCGAGAGAGACGGGATCGGTGTGGCTGGGTTATTACATGAGATAA
                                                                                                  

CD373557Tu01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557Tu02P067C03P067C091R1_01      ------------------------------------------------------------
CD373557As01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557As01P067C03P067C091R1_03      AGGCGGTGATAGGAGAAAAACATATCAAGAGGATGAGGGAATTGCGATTCCGTGAGCTGG
CD373557As02P067C03P067C091R1_03      AGGCGGTGATAGGAGAAAAACATATCAAGAGGATGAGGGAATTGCGATTCCGTGAGCTGG
CD373557At01P067C03P067C091R1_03      AGGCGGTGATAGGAGAAAAACATTTCACGAGGAAGAGGGAATTGCGACTCCGCGAGCTGG
CD373557At02P067C03P067C091R1_03      AGGCGGTGATAGGAGAAAAACATTTCACGAGGAAGAGGGAATTGCGACTCCGCGAGCTGG
                                                                                                  

CD373557Tu01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557Tu02P067C03P067C091R1_01      ------------------------------------------------------------
CD373557As01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557As01P067C03P067C091R1_03      TTTCTCTCATCTGGCATTTTTTCGCGGCTATTGTCAACCAACATATAGAGAGTAGTCCCC
CD373557As02P067C03P067C091R1_03      TTTCTCTCATCTGGCATTTTTTCGCGGCTATTGTCAACCAACATATAGAGAGTAGTCCCC
CD373557At01P067C03P067C091R1_03      TTTCTCTCATCTGGCATTTTATCGCGGCTACCA---------ACATATAGAGTATTCCCC
CD373557At02P067C03P067C091R1_03      TTTCTCTCATCTGGCATTTTATCGCGGCTACCA---------ACATATAGAGTATTCCCC
                                                                                                  

CD373557Tu01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557Tu02P067C03P067C091R1_01      ------------------------------------------------------------
CD373557As01P067C03P067C091R1_01      ------------------------------------------------------------
CD373557As01P067C03P067C091R1_03      AAATGGGGTTGCCCTTATCCCTACAGACCTGCTATCCTTC----TAAACTATTGGTATC-
CD373557As02P067C03P067C091R1_03      AAATGGGGTTGCCCTTATCCCTACAGACCTGCTATCCTTC----TAAACTATTGGTATCG
CD373557At01P067C03P067C091R1_03      AAATGGGGTTGCCCTTATCCCTACAGACCTGCTATCCTTCCTTGTAAACTA---------
CD373557At02P067C03P067C091R1_03      AAATGGGGTTGCCCTTATCCCTACAGACCTGCTATCCTTCCTTGTAAACTAGTGGTATCG
                                                                                                  

CD373557Tu01P067C03P067C091R1_01      -----------------------------------
CD373557Tu02P067C03P067C091R1_01      -----------------------------------
CD373557As01P067C03P067C091R1_01      -----------------------------------
CD373557As01P067C03P067C091R1_03      -----------------------------------
CD373557As02P067C03P067C091R1_03      CA---------------------------------
CD373557At01P067C03P067C091R1_03      -----------------------------------
CD373557At02P067C03P067C091R1_03      CACCAAAAAGTGGCTATACCTGTCCCTTGCATGGA