MUSCLE (3.6) multiple sequence alignment


CD453952Ld02P067E05P067E111R1_03      ------------------TCCGTCGAATACCTCG-----------TGTG--------CCT
CD453952At01P067E05P067E111R1_05      ------ATCGTAAGTTTCTTATCCTAATACTTTGTTATTCACCTTTGTGGCCTTACCCTT
CD453952At02P067E05P067E111R1_05      ----------------TCTTATCCTAATACTTTGTTATTCACCTTTGTGGCCTTACCCTT
CD453952Tu01P067E05P067E111R1_06      ------ATCGT-AGTTTCTTATCCTAATACTTTGTTATTCACCTTTGTGGCCTTACCCTT
CD453952Tu02P067E05P067E111R1_06      ------ATCGTAAGTTTCTTATCCTAATACTTTGTTATTCACCTTTGTGGCCTTACCCTT
CD453952As01P067E05P067E111R1_05      TTTAGCATCGTAAGTATCTTATCCTAATACTTTGTTATTCACCTTTGTGGCCTTACCCTT
CD453952As02P067E05P067E111R1_05      -------------GTTTCTTATCCTAATACTTTGTTATTCACCTTTGTGGCCTTACCCTT
                                                        *    * ***** * *           ****        * *

CD453952Ld02P067E05P067E111R1_03      AGC------------ACGTGAGCT--AAAGCACCT-------------------------
CD453952At01P067E05P067E111R1_05      AGTTTTTGG------ATTCGAGCTTGTAGGCATCTTCTTGCTGTGTTGATGGTAATAATT
CD453952At02P067E05P067E111R1_05      AGTTTTTGG------ATTCGAGCTTGTAGGCATCTTCTTGCTGTGTTGATGGTAATAATT
CD453952Tu01P067E05P067E111R1_06      AGTTTTTGGACTTGAATTCGAGCTTGTAGGCATCTTCTTGCTGTGTTGATGGTAATAATT
CD453952Tu02P067E05P067E111R1_06      AGTTTTTGGACTTGAATTCGAGCTTGTAGGCATCTTCTTGCTGTGTTGATGGTAATAATT
CD453952As01P067E05P067E111R1_05      AGTTTTTGGACTTGAATTCGAGCTTGTAGGCATCTTCTTGCTGTGTGGATGGTAATAGTT
CD453952As02P067E05P067E111R1_05      AGTTTTTGGACTTGAATTCGAGCTTGTAGGCATCTTCTTGCTGTGTGGATGGTAATAGTT
                                      **             *   *****   * *** **                         

CD453952Ld02P067E05P067E111R1_03      ------------------CGAAG-------------------------------------
CD453952At01P067E05P067E111R1_05      AACTTCCAGAATTGCTTCCACAGCTTTGTGGTCCAATATGCTAAAATGCATACGGTTATA
CD453952At02P067E05P067E111R1_05      AACTTCCAGAATTGCTTCCACAGCTTTGTGGTCCAATATGCTAAAATGCATACGGTTATA
CD453952Tu01P067E05P067E111R1_06      AACTTCCAGAATTGCTTCCGCAGCTTTGTGGTCCAATATGCTAAAATGCATATGGTTATA
CD453952Tu02P067E05P067E111R1_06      AACTTCCAGAATTGCTTCCGCAGCTTTGTGGTCCAATATGCTAAAATGCATATGGTTATA
CD453952As01P067E05P067E111R1_05      AACTTCCAGATTTGCCTCCGCAGTTGTGTGGTCCGATATGCTCAAATGCATAGAGTTATA
CD453952As02P067E05P067E111R1_05      AACTTCCAGATTTGCCTCCGCAGTTGTGTGGTCCGATATGCTCAAATGCATAGAGTTATA
                                                        *  **                                     

CD453952Ld02P067E05P067E111R1_03      ------------------------------------------------------------
CD453952At01P067E05P067E111R1_05      GTTACATGCAAGTGTTTGCTA-TACAGCTATAGTTGCAGTTGTATATCTTATACAACTGT
CD453952At02P067E05P067E111R1_05      GTTACATGCAAGTGTTTGCTA-TACAGCTATAGTTGCAGTTGTATATCTTATACAACTGT
CD453952Tu01P067E05P067E111R1_06      GTTACATACAGGTGTTTGCTA-TACAGCTATAGTTGCAGTTGTATATCTTATACAACTGT
CD453952Tu02P067E05P067E111R1_06      GTTACATACAGGTGTTTGCTA-TACAGCTATAGTTGCAGTTGTATATCTTATACAACTGT
CD453952As01P067E05P067E111R1_05      GTTACATACAGGTGTTTGCTATTCCAGCTATAATGGCAGTTGTATATCTAATACAACTGT
CD453952As02P067E05P067E111R1_05      GTTACATACAGGTGTTTGCTA-TACAGCTATAATTGCAGTTGTATATCTTATACAACTGT
                                                                                                  

CD453952Ld02P067E05P067E111R1_03      ----------ATCTAC-----CCTCG-------ACGGCCACT------------------
CD453952At01P067E05P067E111R1_05      AATAATTCTTATCTACTCATACCTCAGTATGACATGGAAACTTCTTTTAACCTTCTTTTA
CD453952At02P067E05P067E111R1_05      AATAATTCTTATCTACTCATACCTCAGTATGACATGGAAACTTCTTTTAACCTTCTTTTA
CD453952Tu01P067E05P067E111R1_06      AATAATTCTTATCTACTTATACCTCAGTATGACATGGAAACTTCTTTTAACCTTCTTTTA
CD453952Tu02P067E05P067E111R1_06      AATAATTCTTATCTACTTATACCTCAGTATGACATGGAAACTTCTTTTAACCTTCTTTTA
CD453952As01P067E05P067E111R1_05      AATAATTCTTATCTACTTACACCTCAGTATGACATGGAAACTTCTTTTAACCTTCTTTTA
CD453952As02P067E05P067E111R1_05      AATAATTCTTATCTACTTATACCTCACTATGACATGGAAACTTCTTTTAACCTTCTTTTA
                                                ******     ****        * **  ***                  

CD453952Ld02P067E05P067E111R1_03      ----AAAAACAGA-GCATTCGGAGTGCTC-TGTT-TGCGGACGAGGCCG----ACATCT-
CD453952At01P067E05P067E111R1_05      ATGAGATAGTAGATGTACTTGGTGAACTTGTGTCATACATAAGAGGCTGTATTGCATCTC
CD453952At02P067E05P067E111R1_05      ATGAGATAGTAGATGTACTTGGTGAACTTGTGTCATACATAAGAGGCTGTATTGCATCTC
CD453952Tu01P067E05P067E111R1_06      ATGAGATAGTAGATGTACTTGGTGAACTTGTGTCATACATAAGAGGCTGTATTTCATCTC
CD453952Tu02P067E05P067E111R1_06      ATGAGATAGTAGATGTACTTGGTGAACTTGTGTCATACATAAGAGGCTGTATTTCATCTC
CD453952As01P067E05P067E111R1_05      ATGAGATAGTAGATGTACTTGGTGAACTTGTGTCATACATAAGAGGCTGTATTGCATCTC
CD453952As02P067E05P067E111R1_05      ATGAGATAGTAGATGTACTTGGTGAACTTGTGTCATACATAAGAGGCTGTATTGCATCTC
                                           * *  *** * * * ** *  **  ***  * *  * ***** *     ***** 

CD453952Ld02P067E05P067E111R1_03      ------------------------------------------------------------
CD453952At01P067E05P067E111R1_05      ATAGTTTTCATGTTATTGAGTTGTTTGAGGAACTGAAAG-AAAAATCCAACTTAATGTTT
CD453952At02P067E05P067E111R1_05      ATAGTTTTCATGTTATTGAGTTGTTTGAGGAACTGAAAG-AAAAATCCAACTTAATGTTT
CD453952Tu01P067E05P067E111R1_06      ATATTTTTCATTTTATTGAGTTGTTTGAGGAGCTGAAAGAAAAAATCCAACTTAATGTTG
CD453952Tu02P067E05P067E111R1_06      ATATTTTTCATTTTATTGAGTTGTTTGAGGAGCTGAAAGAAAAAATCCAACTTAATGTTG
CD453952As01P067E05P067E111R1_05      ATA---------------------------------------------------------
CD453952As02P067E05P067E111R1_05      ATATTTTTCATTTTATTGAGTTGTTGGAGGAACTGAAAG-AAAAATCCAACTTGATGCTT
                                                                                                  

CD453952Ld02P067E05P067E111R1_03      ------------------------------------------------AGGCCACTAATT
CD453952At01P067E05P067E111R1_05      CAGGTTTGTGGGAGTGCTGATATAGCTGTTAAGGTTGAAAGTCAACTTAAGCTTGTAATT
CD453952At02P067E05P067E111R1_05      CAGGTTTGTGGGAGTGCTGATATAGCTGTTAAGGTTGAAAGTCAACTTAAGCTTGTAATT
CD453952Tu01P067E05P067E111R1_06      CAGGTTTGTGGGAGTGCTGATATAGCTGTTAAGGTTGAAAGTCAACTTAAGCTTGTAATT
CD453952Tu02P067E05P067E111R1_06      CAGGTTTGTGGGAGTGCTGATATAGCTGTTAAGGTTGAAAGTCAACTTAAGCTTGTAATT
CD453952As01P067E05P067E111R1_05      ------------------------------------------------------------
CD453952As02P067E05P067E111R1_05      CAGGTTTGTGGGAGTGCTGATATAGCTGTTAAGGTTGAAAGTCAACTTAAGCTTGTAATT
                                                                                                  

CD453952Ld02P067E05P067E111R1_03      GGTCC---------------------------CGCTTC----------------------
CD453952At01P067E05P067E111R1_05      AGGCCTATGTATTCGAACCCTCCTCTTCATGGTGCTTCTATCGTGGCTACCATACTTAAG
CD453952At02P067E05P067E111R1_05      AGGCCTATGTATTCGAACCCTCCTCTTCATGGTGCTTCTATC------------------
CD453952Tu01P067E05P067E111R1_06      AGGCCTATGTATTCGAACCCTCCTCTTCATGGTGCTTCTATCGTGGCTACCATACTTAAG
CD453952Tu02P067E05P067E111R1_06      AGGCCTATGTATTCGAACCCTCCTCTTCATGGTGCTTCTATCGTGGCTACCATACTTAAG
CD453952As01P067E05P067E111R1_05      ------------------------------------------------------------
CD453952As02P067E05P067E111R1_05      AGGCCTATGTATTCGAACCCTCCTCTTCATGGTGCTTCTATTGTGGCTACCATACTTAAG
                                                                                                  

CD453952Ld02P067E05P067E111R1_03      ------------------------------------------------------------
CD453952At01P067E05P067E111R1_05      GACAGGTAGTATTCTATTCAATCATAGACTGAGTTGTGTTGAAATGAATTTTTATTGGCA
CD453952At02P067E05P067E111R1_05      ------------------------------------------------------------
CD453952Tu01P067E05P067E111R1_06      GACAGGTAGTATTCTATTCAATCATAGAATGAGTTGTGTTGAAATGAATTTTTATTGGCA
CD453952Tu02P067E05P067E111R1_06      GACAGGTAGTATTCTATTCAATCATA----------------------------------
CD453952As01P067E05P067E111R1_05      ------------------------------------------------------------
CD453952As02P067E05P067E111R1_05      GACAGGTACTATTCTATTCAATCATAGAATGAGTTATGTTCAAACGAATTTTTATTGGCA
                                                                                                  

CD453952Ld02P067E05P067E111R1_03      ------------------------------------------------------------
CD453952At01P067E05P067E111R1_05      GATCGACAAATCTAATAATTGGTAGTGCTTAGTTCTTATTGACTATNTTTTCTCAATTTG
CD453952At02P067E05P067E111R1_05      ------------------------------------------------------------
CD453952Tu01P067E05P067E111R1_06      GATCGACAAATCTAATAATTGGTAGTGCTTAGTTC-------------------------
CD453952Tu02P067E05P067E111R1_06      ------------------------------------------------------------
CD453952As01P067E05P067E111R1_05      ------------------------------------------------------------
CD453952As02P067E05P067E111R1_05      GATCGACAAATCTTATAATTGGTAGTGCTTAGTTCTTATTGACTATTTTTTGTCAATTTG
                                                                                                  

CD453952Ld02P067E05P067E111R1_03      ---------------------------------------------------------
CD453952At01P067E05P067E111R1_05      TAGTGCTATGTTCGACGAATGGACTCTGGAGCTGAAGCCATGGCTGATAGGATATTA
CD453952At02P067E05P067E111R1_05      ---------------------------------------------------------
CD453952Tu01P067E05P067E111R1_06      ---------------------------------------------------------
CD453952Tu02P067E05P067E111R1_06      ---------------------------------------------------------
CD453952As01P067E05P067E111R1_05      ---------------------------------------------------------
CD453952As02P067E05P067E111R1_05      TAGTGCTATGTTCG-------------------------------------------