CLUSTAL W (1.83) multiple sequence alignment


USDA009_E05_BE604058At01P017E05E11F1_039      ATGAGAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA031F_E05_BE604058At01P017E05P017E111      ATGAGAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA009_A05_BE604058Tu01P017E05E11F1_047      ATGAGAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA009_B05_BE604058Tu02P017E05E11F1_045      ----GAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA031F_A05_BE604058Tu01P017E05P017E111      ----GAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA031F_B05_BE604058Tu02P017E05P017E111      ATGAGAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA031F_C05_BE604058As01P017E05P017E111      -----AAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA031F_D05_BE604058As02P017E05P017E111      ATGAGAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA009_C05_BE604058As01P017E05E11F1_043      -TGAGAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA009_D05_BE604058As02P017E05E11F1_041      ATGAGAAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA009_F05_BE604058At02P017E05E11F1_037      -----AAGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
USDA031F_F05_BE604058At02P017E05P017E111      ------AGTGGGGCTGTCGCCGGCGAGGTACCGCGACGTG
                                                    **********************************

USDA009_E05_BE604058At01P017E05E11F1_039      GTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGA
USDA031F_E05_BE604058At01P017E05P017E111      GTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGA
USDA009_A05_BE604058Tu01P017E05E11F1_047      GTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGA
USDA009_B05_BE604058Tu02P017E05E11F1_045      GTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGA
USDA031F_A05_BE604058Tu01P017E05P017E111      GTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGA
USDA031F_B05_BE604058Tu02P017E05P017E111      GTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGA
USDA031F_C05_BE604058As01P017E05P017E111      GTGCGGATGACGAGGCCCACCTACTCGCTCCACTCGCGGA
USDA031F_D05_BE604058As02P017E05P017E111      GTGCGGATGACGAGGCCCACCTACTCGCTCCACTCGCGGA
USDA009_C05_BE604058As01P017E05E11F1_043      GTGCGGATGACGAGGCCCACCTACTCGCTCCACTCGCGGA
USDA009_D05_BE604058As02P017E05E11F1_041      GTGCGGATGACGAGGCCCACCTACTCGCTCCACTCGCGGA
USDA009_F05_BE604058At02P017E05E11F1_037      GTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGA
USDA031F_F05_BE604058At02P017E05P017E111      GTGCGGATGACGAGGCCGACCTACTCGCTCCACTCGCGGA
                                              ***************** **********************

USDA009_E05_BE604058At01P017E05E11F1_039      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA031F_E05_BE604058At01P017E05P017E111      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA009_A05_BE604058Tu01P017E05E11F1_047      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA009_B05_BE604058Tu02P017E05E11F1_045      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA031F_A05_BE604058Tu01P017E05P017E111      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA031F_B05_BE604058Tu02P017E05P017E111      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA031F_C05_BE604058As01P017E05P017E111      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA031F_D05_BE604058As02P017E05P017E111      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA009_C05_BE604058As01P017E05E11F1_043      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA009_D05_BE604058As02P017E05E11F1_041      ACCGTGTCACGCAGGAGGAGCTCATCAAAGAGGTCACCGA
USDA009_F05_BE604058At02P017E05E11F1_037      ACCGTGTCACGCAGGAGGAGCTCATCAAGGAGGTCACCGA
USDA031F_F05_BE604058At02P017E05P017E111      ACCGTGTCACGCAGGAGGAGCTCATCAAGGAGGTCACCGA
                                              **************************** ***********

USDA009_E05_BE604058At01P017E05E11F1_039      CGTCGACGCCATCGGGGTCGACACCCACAAGCACAACCGC
USDA031F_E05_BE604058At01P017E05P017E111      CGTCGACGCCATCGGGGTCGACACCCACAAGCACAACCGC
USDA009_A05_BE604058Tu01P017E05E11F1_047      CGTGGACGCCATCGGGGTCGACACCCACAAGCACAACCGG
USDA009_B05_BE604058Tu02P017E05E11F1_045      CGTGGACGCCATCGGGGTCGACACCCACAAGCACAACCGG
USDA031F_A05_BE604058Tu01P017E05P017E111      CGTGGACGCCATCGGGGTCGACACCCACAAGCACAACCGG
USDA031F_B05_BE604058Tu02P017E05P017E111      CGTGGACGCCATCGGGGTCGACACCCACAAGCACAACCGG
USDA031F_C05_BE604058As01P017E05P017E111      CGTCGACGCCATCGGGGTCGACACCCACAAGCACAACCGC
USDA031F_D05_BE604058As02P017E05P017E111      CGTCGACGCCATCGGGGTCGACACCCACAAGCACAACCGC
USDA009_C05_BE604058As01P017E05E11F1_043      CGTCGACGCCATCGGGGTCGACACCCACAAGCACAACCGC
USDA009_D05_BE604058As02P017E05E11F1_041      CGTCGACGCCATCGGGGTCGACACCCACAAGCACAACCGC
USDA009_F05_BE604058At02P017E05E11F1_037      CGTGGATGCCATCGGGGTCGACACCCACAAGCACAACCGG
USDA031F_F05_BE604058At02P017E05P017E111      CGTGGATGCCATCGGGGTCGACACCCACAAGCACAACCGG
                                              *** ** ******************************** 

USDA009_E05_BE604058At01P017E05E11F1_039      CTCCTCCGCCTCGCCATCGACGACCTCGTAAGCACAAACA
USDA031F_E05_BE604058At01P017E05P017E111      CTCCTCCGCCTCGCCATCGACGACCTCGTAAGCACAAACA
USDA009_A05_BE604058Tu01P017E05E11F1_047      CTCCTCCGCCTCGCCATTGACGACCTCGTAATCATAAACA
USDA009_B05_BE604058Tu02P017E05E11F1_045      CTCCTCCGCCTCGCCATTGACGACCTCGTAATCATAAACA
USDA031F_A05_BE604058Tu01P017E05P017E111      CTCCTCCGCCTCGCCATTGACGACCTCGTAATCATAAACA
USDA031F_B05_BE604058Tu02P017E05P017E111      CTCCTCCGCCTCGCCATTGACGACCTCGTAATCATAAACA
USDA031F_C05_BE604058As01P017E05P017E111      CTCCTCCGCCTCGCCATCGACGACCTCGTAAGCACGACAA
USDA031F_D05_BE604058As02P017E05P017E111      CTCCTCCGCCTCGCCATCGACGACCTCGTAAGCACGACAA
USDA009_C05_BE604058As01P017E05E11F1_043      CTCCTCCGCCTCGCCATCGACGACCTCGTAAGCACGACAA
USDA009_D05_BE604058As02P017E05E11F1_041      CTCCTCCGCCTCGCCATCGACGACCTCGTAAGCACGACAA
USDA009_F05_BE604058At02P017E05E11F1_037      CTCCTCCGCCTCGCCATCGACGACCTCGTAAGCACAAACA
USDA031F_F05_BE604058At02P017E05P017E111      CTCCTCCGCCTCGCCATCGACGACCTCGTAAGCACAAACA
                                              ***************** ************* **  *  *

USDA009_E05_BE604058At01P017E05E11F1_039      ACAACATCAACATATGCATGTCTTTGGTTTCT----CGTT
USDA031F_E05_BE604058At01P017E05P017E111      ACAACATCAACATATGCATGTCTTTGGTTTCT----CGTT
USDA009_A05_BE604058Tu01P017E05E11F1_047      ACATCATCAGTTGATTCATGTGTTTGCTTTCT----GAAT
USDA009_B05_BE604058Tu02P017E05E11F1_045      ACATCATCAGTTGATTCATGTGTTTGCTTTCT----GAAT
USDA031F_A05_BE604058Tu01P017E05P017E111      ACATCATCAGTTGATTCATGTGTTTGCTTTCT----GAAT
USDA031F_B05_BE604058Tu02P017E05P017E111      ACATCATCAGTTGATTCATGTGTTTGCTTTCT----GAAT
USDA031F_C05_BE604058As01P017E05P017E111      ACAACATCAACAGATCCATGTGTTTGCTTTCTTAATGAAT
USDA031F_D05_BE604058As02P017E05P017E111      ACAACATCAACAGATCCATGTGTTTGCTTTCTTAATGAAT
USDA009_C05_BE604058As01P017E05E11F1_043      ACAACATCAACAGATCCATGTGTTTGCTTTCTTAATGAAT
USDA009_D05_BE604058As02P017E05E11F1_041      ACAACATCAACAGATCCATGTGTTTGCTTTCTTAATGAAT
USDA009_F05_BE604058At02P017E05E11F1_037      ACAACATCAAAATATTCATGTGTTTGGTTTCTTGATCGAT
USDA031F_F05_BE604058At02P017E05P017E111      ACAACATCAAAATATTCATGTGTTTGGTTTCTTGATCGAT
                                              *** *****    ** ***** **** *****       *

USDA009_E05_BE604058At01P017E05E11F1_039      GT-------------TGACTGA------TGATCATGTGAT
USDA031F_E05_BE604058At01P017E05P017E111      GT-------------TGACTGA------TGATCATGTGAT
USDA009_A05_BE604058Tu01P017E05E11F1_047      GT-------------TGATTGA------TGATCATGTGAT
USDA009_B05_BE604058Tu02P017E05E11F1_045      GT-------------TGATTGA------TGATCATGTGAT
USDA031F_A05_BE604058Tu01P017E05P017E111      GT-------------TGATTGA------TGATCATGTGAT
USDA031F_B05_BE604058Tu02P017E05P017E111      GT-------------TGATTGA------TGATCATGTGAT
USDA031F_C05_BE604058As01P017E05P017E111      GT-------------TGATTGA------TGATCATGTGAT
USDA031F_D05_BE604058As02P017E05P017E111      GT-------------TGATTGA------TGATCATGTGAT
USDA009_C05_BE604058As01P017E05E11F1_043      GT-------------TGATTGA------TGATCATGTGAT
USDA009_D05_BE604058As02P017E05E11F1_041      GT-------------TGATTGA------TGATCATGTGAT
USDA009_F05_BE604058At02P017E05E11F1_037      ATGCTCGAGCTCGCGTGATTGACAATGCTGATCATGTGAT
USDA031F_F05_BE604058At02P017E05P017E111      ATGCTCGAGCTCGCGTGATTGACAATGCTGATCATGTGAT
                                               *             *** ***      ************

USDA009_E05_BE604058At01P017E05E11F1_039      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA031F_E05_BE604058At01P017E05P017E111      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA009_A05_BE604058Tu01P017E05E11F1_047      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA009_B05_BE604058Tu02P017E05E11F1_045      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA031F_A05_BE604058Tu01P017E05P017E111      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA031F_B05_BE604058Tu02P017E05P017E111      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA031F_C05_BE604058As01P017E05P017E111      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA031F_D05_BE604058As02P017E05P017E111      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA009_C05_BE604058As01P017E05E11F1_043      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA009_D05_BE604058As02P017E05E11F1_041      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA009_F05_BE604058At02P017E05E11F1_037      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
USDA031F_F05_BE604058At02P017E05P017E111      GGATGGTGCAGCTGGATTCGCTGAAGCCCAAGGAGAGCGT
                                              ****************************************

USDA009_E05_BE604058At01P017E05E11F1_039      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGAGG
USDA031F_E05_BE604058At01P017E05P017E111      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGAGG
USDA009_A05_BE604058Tu01P017E05E11F1_047      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGAGGGAGG
USDA009_B05_BE604058Tu02P017E05E11F1_045      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGAGGGAGG
USDA031F_A05_BE604058Tu01P017E05P017E111      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGAGGGAGG
USDA031F_B05_BE604058Tu02P017E05P017E111      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGAGGGAGG
USDA031F_C05_BE604058As01P017E05P017E111      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGAGG
USDA031F_D05_BE604058As02P017E05P017E111      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGAGG
USDA009_C05_BE604058As01P017E05E11F1_043      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGAGG
USDA009_D05_BE604058As02P017E05E11F1_041      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGAGG
USDA009_F05_BE604058At02P017E05E11F1_037      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGCGG
USDA031F_F05_BE604058At02P017E05P017E111      GGTGATCAGGCAGAGGTTCGGGCTGGACGGCAGGGGGCGG
                                              ********************************* *** **

USDA009_E05_BE604058At01P017E05E11F1_039      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGA-T----
USDA031F_E05_BE604058At01P017E05P017E111      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGA-TCTGA
USDA009_A05_BE604058Tu01P017E05E11F1_047      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGAATCTCG
USDA009_B05_BE604058Tu02P017E05E11F1_045      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGA-TCTCG
USDA031F_A05_BE604058Tu01P017E05P017E111      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGA-TCTGA
USDA031F_B05_BE604058Tu02P017E05P017E111      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGA-TCTGA
USDA031F_C05_BE604058As01P017E05P017E111      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGA-TCTCG
USDA031F_D05_BE604058As02P017E05P017E111      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGAATCTCG
USDA009_C05_BE604058As01P017E05E11F1_043      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGA-TCTGA
USDA009_D05_BE604058As02P017E05E11F1_041      CGCACGCTGAGCGAGATCGCCGGCAACCTGAGGA-TCTGA
USDA009_F05_BE604058At02P017E05E11F1_037      CGCACATTGAGCGAGATCGCCGGCAACCTGAGGATCTGAG
USDA031F_F05_BE604058At02P017E05P017E111      CGCACATTGAGCGAGATCGCCGGCAACCTGAGGATCTGAG
                                              *****  ***************************      

USDA009_E05_BE604058At01P017E05E11F1_039      ---------
USDA031F_E05_BE604058At01P017E05P017E111      GGGGAGATG
USDA009_A05_BE604058Tu01P017E05E11F1_047      AGGGAGATG
USDA009_B05_BE604058Tu02P017E05E11F1_045      AGGGAGAT-
USDA031F_A05_BE604058Tu01P017E05P017E111      G--------
USDA031F_B05_BE604058Tu02P017E05P017E111      GGGGAGATG
USDA031F_C05_BE604058As01P017E05P017E111      AGGGAGATG
USDA031F_D05_BE604058As02P017E05P017E111      AGGGAGATG
USDA009_C05_BE604058As01P017E05E11F1_043      GGGGAGATG
USDA009_D05_BE604058As02P017E05E11F1_041      GGGGAGA--
USDA009_F05_BE604058At02P017E05E11F1_037      GGGGAGATG
USDA031F_F05_BE604058At02P017E05P017E111      GGG-AGATG