CLUSTAL W (1.83) multiple sequence alignment USDA009_A11_BE604058Tu01P017E05E11R1_095 -----------CCCGAACCTCTGCCTGATCACC-CGCTCT USDA031R_B05_BE604058Tu02P017E05P017E111 ----------GCCCGAACCTCTGCCTGATCACCACGCTCT USDA031R_A05_BE604058Tu01P017E05P017E111 -----------CCCGAACCTCTGCCTGATCACCACGCTCT USDA009_B11_BE604058Tu02P017E05E11R1_093 -----------CCCGAACCTCTGCCTGATCACCACGCTCT USDA009_D12_BE604058Ld06P017E05E11R1_090 -CTGCCGTCAGCCCGAAC-TCTGCCTGATC-CCACGCTCT USDA031R_D05_BE604058As02P017E05P017E111 CCTGCCGTCCGCCCGAACCTCTGCCTGATCACCACGCTCT USDA031R_C06_BE604058Ld05P017E05P017E111 --TGCCGTCCGCCCGAACCTCTGCCTGATCACCACGCTCT USDA009_D11_BE604058As02P017E05E11R1_089 -CTGCCGTCCGCCCGAACCTCTGCCTGATCACCACGCTCT USDA009_C11_BE604058As01P017E05E11R1_091 CCTGCCGTCCGCCCGAACCTCTGCCTGATCACCACGCTCT USDA031R_C05_BE604058As01P017E05P017E111 -----------CCCGAACCTCTGCCTGATCACCACGCTCT USDA009_F11_BE604058At02P017E05E11R1_085 -----GTCCAGCCCGAACCTCTGCCTGATCACCACGCTCT USDA031R_F05_BE604058At02P017E05P017E111 -----------CCCGAACCTCTGCCTGATCACCACGCTCT USDA009_E11_BE604058At01P017E05E11R1_087 -----------CCCGAACCTCTGCCTGATC-CCACGCTCT USDA031R_E05_BE604058At01P017E05P017E111 ----------GCCCGAACCTCTGCCTGATCACC-CGCTCT ******* *********** ** ****** USDA009_A11_BE604058Tu01P017E05E11R1_095 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA031R_B05_BE604058Tu02P017E05P017E111 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA031R_A05_BE604058Tu01P017E05P017E111 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA009_B11_BE604058Tu02P017E05E11R1_093 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA009_D12_BE604058Ld06P017E05E11R1_090 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA031R_D05_BE604058As02P017E05P017E111 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA031R_C06_BE604058Ld05P017E05P017E111 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA009_D11_BE604058As02P017E05E11R1_089 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA009_C11_BE604058As01P017E05E11R1_091 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA031R_C05_BE604058As01P017E05P017E111 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA009_F11_BE604058At02P017E05E11R1_085 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA031R_F05_BE604058At02P017E05P017E111 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA009_E11_BE604058At01P017E05E11R1_087 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT USDA031R_E05_BE604058At01P017E05P017E111 CCTTGGGCTTCAGCGAATCCAGCTGCACCATCCATCACAT **************************************** USDA009_A11_BE604058Tu01P017E05E11R1_095 GATCATCA--ATCAACATTC-----------------A-- USDA031R_B05_BE604058Tu02P017E05P017E111 GATCATCA--ATCAACATTC-----------------A-- USDA031R_A05_BE604058Tu01P017E05P017E111 GATCATCA--ATCAACATTC-----------------A-- USDA009_B11_BE604058Tu02P017E05E11R1_093 GATCATCA--ATCAACATTC-----------------A-- USDA009_D12_BE604058Ld06P017E05E11R1_090 GATCATCA--ATCAACATTC-----------------ATT USDA031R_D05_BE604058As02P017E05P017E111 GATCATCA--ATCAACATTC-----------------ATT USDA031R_C06_BE604058Ld05P017E05P017E111 GATCATCA--ATCAACATTC-----------------ATT USDA009_D11_BE604058As02P017E05E11R1_089 GATCATCA--ATCAACATTC-----------------ATT USDA009_C11_BE604058As01P017E05E11R1_091 GATCATCA--ATCAACATTC-----------------ATT USDA031R_C05_BE604058As01P017E05P017E111 GATCATCA--ATCAACATTC-----------------ATT USDA009_F11_BE604058At02P017E05E11R1_085 GATCAGCATTGTCAATCACGCGAGCTCGAGCATATCGATC USDA031R_F05_BE604058At02P017E05P017E111 GATCAGCATTGTCAATCACGCGAGCTCGAGCATATCGATC USDA009_E11_BE604058At01P017E05E11R1_087 GATCATCA--GTCAACAACG-------------------- USDA031R_E05_BE604058At01P017E05P017E111 GATCATCA--GTCAACAACG-------------------- ***** ** **** USDA009_A11_BE604058Tu01P017E05E11R1_095 --GAAAGCAAACACATGAATCAACTGATGATGTTGTTTAT USDA031R_B05_BE604058Tu02P017E05P017E111 --GAAAGCAAACACATGAATCAACTGATGATGTTGTTTAT USDA031R_A05_BE604058Tu01P017E05P017E111 --GAAAGCAAACACATGAATCAACTGATGATGTTGTTTAT USDA009_B11_BE604058Tu02P017E05E11R1_093 --GAAAGCAAACACATGAATCAACTGATGATGTTGTTTAT USDA009_D12_BE604058Ld06P017E05E11R1_090 AAGAAAGCACACACATGGATCTGTTGAGGTTGTTTGTCGT USDA031R_D05_BE604058As02P017E05P017E111 AAGAAAGCAAACACATGGATCTGTTGATGTTGTTTGTCGT USDA031R_C06_BE604058Ld05P017E05P017E111 AAGAAAGCAAACACATGGATCTGTTGATGTTGTTTGTCGT USDA009_D11_BE604058As02P017E05E11R1_089 AAGAAAGCAAACACATGGATCTGTTGATGTTGTTTGTCGT USDA009_C11_BE604058As01P017E05E11R1_091 AAGAAAGCAAACACATGGATCTGTTGATGTTGTTTGTCGT USDA031R_C05_BE604058As01P017E05P017E111 AAGAAAGCAAACACATGGATCTGTTGATGTTGTTTGTCGT USDA009_F11_BE604058At02P017E05E11R1_085 AAGAAACCAAACACATGAATATTTTGATGTTGTTGTTTGT USDA031R_F05_BE604058At02P017E05P017E111 AAGAAACCAAACACATGAATATTTTGATGTTGTTGTTTGT USDA009_E11_BE604058At01P017E05E11R1_087 -AGAAACCAAAGACATGCATATGTTGATGTTGTTGTTTGT USDA031R_E05_BE604058At01P017E05P017E111 -AGAAACCAAAGACATGCATATGTTGATGTTGTTGTTTGT **** ** * ***** ** *** * **** * * USDA009_A11_BE604058Tu01P017E05E11R1_095 GATTACGAGGTCGTCAATGGCGAGGCGGAGGAGCCGGTTG USDA031R_B05_BE604058Tu02P017E05P017E111 GATTACGAGGTCGTCAATGGCGAGGCGGAGGAGCCGGTTG USDA031R_A05_BE604058Tu01P017E05P017E111 GATTACGAGGTCGTCAATGGCGAGGCGGAGGAGCCGGTTG USDA009_B11_BE604058Tu02P017E05E11R1_093 GATTACGAGGTCGTCAATGGCGAGGCGGAGGAGCCGGTTG USDA009_D12_BE604058Ld06P017E05E11R1_090 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGATGCGGTTG USDA031R_D05_BE604058As02P017E05P017E111 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGGCGGTTG USDA031R_C06_BE604058Ld05P017E05P017E111 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGGCGGTTG USDA009_D11_BE604058As02P017E05E11R1_089 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGGCGGTTG USDA009_C11_BE604058As01P017E05E11R1_091 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGGCGGTTG USDA031R_C05_BE604058As01P017E05P017E111 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGGCGGTTG USDA009_F11_BE604058At02P017E05E11R1_085 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGCCGGTTG USDA031R_F05_BE604058At02P017E05P017E111 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGCCGGTTG USDA009_E11_BE604058At01P017E05E11R1_087 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGGCGGTTG USDA031R_E05_BE604058At01P017E05P017E111 GCTTACGAGGTCGTCGATGGCGAGGCGGAGGAGGCGGTTG * ************* **************** ****** USDA009_A11_BE604058Tu01P017E05E11R1_095 TGCTTGTGGGTGTCGACCCCGATGGCGTCCACGTCGGTGA USDA031R_B05_BE604058Tu02P017E05P017E111 TGCTTGTGGGTGTCGACCCCGATGGCGTCCACGTCGGTGA USDA031R_A05_BE604058Tu01P017E05P017E111 TGCTTGTGGGTGTCGACCCCGATGGCGTCCACGTCGGTGA USDA009_B11_BE604058Tu02P017E05E11R1_093 TGCTTGTGGGTGTCGACCCCGATGGCGTCCACGTCGGTGA USDA009_D12_BE604058Ld06P017E05E11R1_090 TGCTTGTGGGTGTCGACCCCGATGGCGTCGACGTCAGTGA USDA031R_D05_BE604058As02P017E05P017E111 TGCTTGTGGGTGTCGACCCCGATGGCGTCGACGTCGGTGA USDA031R_C06_BE604058Ld05P017E05P017E111 TGCTTGTGGGTGTCGACCCCGATGGCGTCGACGTCGGTGA USDA009_D11_BE604058As02P017E05E11R1_089 TGCTTGTGGGTGTCGACCCCGATGGCGTCGACGTCGGTGA USDA009_C11_BE604058As01P017E05E11R1_091 TGCTTGTGGGTGTCGACCCCGATGGCGTCGACGTCGGTGA USDA031R_C05_BE604058As01P017E05P017E111 TGCTTGTGGGTGTCGACCCCGATGGCGTCGACGTCGGTGA USDA009_F11_BE604058At02P017E05E11R1_085 TGCTTGTGGGTGTCGACCCCGATGGCATCCACGTCGGTGA USDA031R_F05_BE604058At02P017E05P017E111 TGCTTGTGGGTGTCGACCCCGATGGCATCCACGTCGGTGA USDA009_E11_BE604058At01P017E05E11R1_087 TGCTTGTGGGTGTCGACCCCGATGGCGTCGACGTCGGTGA USDA031R_E05_BE604058At01P017E05P017E111 TGCTTGTGGGTGTCGACCCCGATGGCGTCGACGTCGGTGA ************************** ** ***** **** USDA009_A11_BE604058Tu01P017E05E11R1_095 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA031R_B05_BE604058Tu02P017E05P017E111 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA031R_A05_BE604058Tu01P017E05P017E111 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA009_B11_BE604058Tu02P017E05E11R1_093 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA009_D12_BE604058Ld06P017E05E11R1_090 CCTCTTTGATGAGCTCCTCCTGCGTGACACGTTTCCGCGA USDA031R_D05_BE604058As02P017E05P017E111 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA031R_C06_BE604058Ld05P017E05P017E111 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA009_D11_BE604058As02P017E05E11R1_089 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA009_C11_BE604058As01P017E05E11R1_091 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA031R_C05_BE604058As01P017E05P017E111 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA009_F11_BE604058At02P017E05E11R1_085 CCTCCTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA031R_F05_BE604058At02P017E05P017E111 CCTCCTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA009_E11_BE604058At01P017E05E11R1_087 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA USDA031R_E05_BE604058At01P017E05P017E111 CCTCTTTGATGAGCTCCTCCTGCGTGACACGGTTCCGCGA **** ************************** ******** USDA009_A11_BE604058Tu01P017E05E11R1_095 GTGGAGCGAGTAGGTCGGCCTCGTCATCCGCACCACGTCG USDA031R_B05_BE604058Tu02P017E05P017E111 GTGGAGCGAGTAGGTCGGCCTCGTCATCCGCACCACGTCG USDA031R_A05_BE604058Tu01P017E05P017E111 GTGGAGCGAGTAGGTCGGCCTCGTCATCCGCACCACGTCG USDA009_B11_BE604058Tu02P017E05E11R1_093 GTGGAGCGAGTAGGTCGGCCTCGTCATCCGCACCACGTCG USDA009_D12_BE604058Ld06P017E05E11R1_090 GTGGAGCAAGTTGGTGGGCCTCGTCATCCGCAC------- USDA031R_D05_BE604058As02P017E05P017E111 GTGGAGCGAGTAGGTGGGCCTCGTCATCCGCACCACGTCG USDA031R_C06_BE604058Ld05P017E05P017E111 GTGGAGCGAGTAGGTGGGCCTCGTCATCCGCACCACGTCG USDA009_D11_BE604058As02P017E05E11R1_089 GTGGAGCGAGTAGGTGGGCCTCGTCATCCGCACCACGTCG USDA009_C11_BE604058As01P017E05E11R1_091 GTGGAGCGAGTAGGTGGGCCTCGTCATCCGCACCACGTCG USDA031R_C05_BE604058As01P017E05P017E111 GTGGAGCGAGTAGGTGGGCCTCGTCATCCGCACCACGTCG USDA009_F11_BE604058At02P017E05E11R1_085 GTGGAGCGAGTAGGTCGGCCTCGTCATCCGCACCACGTCG USDA031R_F05_BE604058At02P017E05P017E111 GTGGAGCGAGTAGGTCGGCCTCGTCATCCGCACCACGTCG USDA009_E11_BE604058At01P017E05E11R1_087 GTGGAGCGAGTAGGTCGGCCTCGTCATCCGCACCACGTCG USDA031R_E05_BE604058At01P017E05P017E111 GTGGAGCGAGTAGGTCGGCCTCGTCATCCGCACCACGTCG ******* *** *** ***************** USDA009_A11_BE604058Tu01P017E05E11R1_095 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA031R_B05_BE604058Tu02P017E05P017E111 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA031R_A05_BE604058Tu01P017E05P017E111 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA009_B11_BE604058Tu02P017E05E11R1_093 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA009_D12_BE604058Ld06P017E05E11R1_090 ---------------------------------------- USDA031R_D05_BE604058As02P017E05P017E111 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA031R_C06_BE604058Ld05P017E05P017E111 CGGTACCTCGCCGGCGACTGCCCCACTTTCTTCATCGTCT USDA009_D11_BE604058As02P017E05E11R1_089 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA009_C11_BE604058As01P017E05E11R1_091 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA031R_C05_BE604058As01P017E05P017E111 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA009_F11_BE604058At02P017E05E11R1_085 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA031R_F05_BE604058At02P017E05P017E111 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA009_E11_BE604058At01P017E05E11R1_087 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA031R_E05_BE604058At01P017E05P017E111 CGGTACCTCGCCGGCGACAGCCCCACTTTCTTCATCGTCT USDA009_A11_BE604058Tu01P017E05E11R1_095 CCTCGTCCGTCGGCGTCCTCCCGAGCTCGAACGACAGCTC USDA031R_B05_BE604058Tu02P017E05P017E111 CCTCGTCCGTCGGCGTCCTCCCGAGCTCGAACGACAGCTC USDA031R_A05_BE604058Tu01P017E05P017E111 CCTCGTCCGTCGGCGTCCTCCCGAGCTCGAACGACAGCTC USDA009_B11_BE604058Tu02P017E05E11R1_093 CCTCGTCCGTCGGCGTCCTCCCGAGCTCGAACGACACTCC USDA009_D12_BE604058Ld06P017E05E11R1_090 ---------------------------------------- USDA031R_D05_BE604058As02P017E05P017E111 CCTCGTCCGTCGGCGCCCTCCCGAGCTCGAACGACA---- USDA031R_C06_BE604058Ld05P017E05P017E111 CCTCGTCCGTCGGCGCCCTCCCGAGCTCGAACGACGGCTC USDA009_D11_BE604058As02P017E05E11R1_089 CCTCGTCCGTCGGCGCCCTCCCGAGCTCGAACGACACTCC USDA009_C11_BE604058As01P017E05E11R1_091 CCTCGTCCGTCGGCGCCCTCCCGAGCTCGAACGACACTCC USDA031R_C05_BE604058As01P017E05P017E111 CCTCGTCCGTCGGCGCCCTCCCGAGCTCGAACGACAGCTC USDA009_F11_BE604058At02P017E05E11R1_085 CCTCGTCTGTCGGCGCCCTCCCGAGCTCGAACG------- USDA031R_F05_BE604058At02P017E05P017E111 CCTCGTCTGTCGGCGCCCTCCCGAGCTCGAACGACAGCTC USDA009_E11_BE604058At01P017E05E11R1_087 CCTCGTCCGTCGGCGCCCTCCCGAGCTCGAACGAC----- USDA031R_E05_BE604058At01P017E05P017E111 CCTCGTCCGTCGGCGCCCTCCCGAGCTCGAACGACACTCC USDA009_A11_BE604058Tu01P017E05E11R1_095 CTCCCTCA USDA031R_B05_BE604058Tu02P017E05P017E111 CTCCCTCA USDA031R_A05_BE604058Tu01P017E05P017E111 CCTCCCT- USDA009_B11_BE604058Tu02P017E05E11R1_093 CTCCCTCA USDA009_D12_BE604058Ld06P017E05E11R1_090 -------- USDA031R_D05_BE604058As02P017E05P017E111 -------- USDA031R_C06_BE604058Ld05P017E05P017E111 CTC----- USDA009_D11_BE604058As02P017E05E11R1_089 CTCCCT-- USDA009_C11_BE604058As01P017E05E11R1_091 CCTCCCT- USDA031R_C05_BE604058As01P017E05P017E111 CTCCCT-- USDA009_F11_BE604058At02P017E05E11R1_085 -------- USDA031R_F05_BE604058At02P017E05P017E111 CCTCCC-- USDA009_E11_BE604058At01P017E05E11R1_087 -------- USDA031R_E05_BE604058At01P017E05P017E111 CTCCCT--