Sequence ID: DB085C05_R1.ab1

Motif:(GCC)5
Motif length:3
SSR:GCCGCCGCCGCCGCC
SSR length:15

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD6552055.3740.004.001.00CTGATCTGAAACTTGGCATT1499139135.002.00
 REVERSE8032154.5142.864.001.00TCTGGATCATGGATGTCTACT

Primer view:

1TCGACTCTAGAGGATCCATCCAGTTCTTGAATTGGCCTGATCTTTCATCTTTCGTTGTCC
61TTGAAATTAAAGGAGAATTTTGTGTAACTGTCAAATCTTTTGGTCTCTGTCTAACATTCG
121CTTAATTTTTGCCAACGTTTTCTTTAACTCGGATTTGAAGTACACCTGACGTTTTTTCCT
181GGGTACGAAATCAGGGCATGGCTTGCTGAATCATCCAATGTTGCATATTCTCTGGTGACT
241GCTGAGTAATACTGCCTCGATCTTGACCAATTTAATTAGGTCAGTCAAGATATAACACAG
301CAACCTAGACTTACGCATAATCTCGATCCGGCCGGCTGTTCCAATGCAAACTCAAGATTT
361TTAGGATCTCTGATGAAAGTATATGCTATTCGCCAATTCGGTAGCGAGAGCAGAGATACT
421GGTCCTACGCCAAGTAGCCGCACGAAGCTTACTCCTGCTTACTAAAGAGAATCCCGAGGT
481GGGAACCAGTCGCCCGATCAGTAGCAATTTACATAGTACTGGAGTACTACTGATGCCGGA
541GATGCCCAACTAATGAGAGCTTTTTCCATAATAAAATGAGGAGTACCAAGCGGCAATTGA
601TTTAGAAGGATGTTTTAGGTATTTTCTCTCATCTAACGGCTAATTATTTACTAACTGATC
                                                        >>>>>
661TGAAACTTGGCATTCATGCCGCCGCCGCCGCCTGAGATCGCGCCTGGCCGCCGGCATCTC
 >>>>>>>>>>>>>>>                                             
721GTTACTTTCCCGACCAACGATGACGTGTATTTGGGCTCCCTCGCCACCACTGCGACCATG
781GGAGTAGACATCCATGATCCAGACATCTATTCAGATTGAAACGCATGCAGGAAAGATGGA
   <<<<<<<<<<<<<<<<<<<<<                                     
841GCTCTGCCATGAACTTGATCAAATCAATCACGTTTAGATCAGATGCTTGTAGCCGCAGCC
901ACTGGGATCCTTT
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0