Sequence ID: DB083J20_F1.ab1

Motif:(CTAG)3
Motif length:4
SSR:CTAGCTAGCTAG
SSR length:12

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD6812154.8842.863.002.00GCTTTTTATGTGTCTGTCCAC1809089083.002.00
 REVERSE8602154.8042.864.002.00GTCTGAATAGTTTGACGATGG

Primer view:

1TCACCGGCATGCCTTCTGACATGATTAATTTACCATGCTTACTTTTGGAGGCATATATAC
61GTGGCAAGCATCCTTATATATACGTGGCATTGCCTAGCCGACACGTGACAAAGGCACGGC
121CACGTGTCTGTCGATAACCGGCGTGGCAGGACGCATGCAAATTAAAAGTGGCCACGTCAC
181CGAGCAACGTGTCGCCCCCAGCGCAAACAATGCATATCCTCCGACCTCTCCACACACACA
241CAGCAGGGAACAGATCATATATACACCCTGCTGCAGTGTAGTGCAGCCGAGCATCAGCAG
301AGCATATATACTCGTACAAGCAAGCAAGCAAAGTCAAGTATAATGGCGAGCGATAGCAGG
361AGATCGCCGATGGAAGGGCAAGTTCCGGGGTACGGCAAGACGGTGGAGAGGGAGAAGAAG
421ATGGAGCACGGGCGGGCGCAGGCCCGGCTAAGCGACGACGACATGCTCAGGACGGGCTAC
481GTCGGCGAGACGCCGCTCGAAGGCGGCAAGATCGCCGACTCCGAACCCGTCGACCTCTTC
541AACGTCCAGCCTCAGCAGCAGCAGCAGGCAATCCGAGGGGAAGAAGAAGATGAAGGGGAT
601GAGAAGGAGCCGTCGGCGCCGAGAGGAGTGCAGCCGGCCAAGCAGGGGATGCACGGCGGC
661CGTCAGCTAGGCCGCCAGTAGCTTTTTATGTGTCTGTCCACCGCCGTTGTATGGTACCAC
                      >>>>>>>>>>>>>>>>>>>>>                  
721TAGCTAGCTAGTACTACTCGTGCTGTAATAAAGACCACAGGCCGCCGCCGACTACACCGC
781CGGCCGGGCGGACAGCCTACGTCCTGCCTGAACTGAGCTCCATGTCGATCTCAGCTGAAC
                                                            <
841CATCGTCAAACTATTCAGACTGTGGATCTGGTTCCCAAGTTTTACATGTTCCCGTTTTTG
 <<<<<<<<<<<<<<<<<<<<                                        
901TCAAATTT
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0