Sequence ID: DB091I18_R1.ab1

Motif:(AAT)4
Motif length:3
SSR:AATAATAATAAT
SSR length:12

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD5522154.9242.863.000.00CTTTCTTCCTCCTCAGTTTTC1539069064.002.00
 REVERSE7042155.5747.625.003.00GTAGCTGCTTTGCTATCACTG

Primer view:

1AGGATCCCTCACGTAGAACAGCCGAATAGGCGTTCCTCCAGCTGCATCGGTTGGTGGTTC
61TTCAGGTATATCACGGTAAAGATGCTTGATAATGAAGAGAGCAGTATCATGGTCTCGCCA
121ATAGTTCCTACAGGAACCAACACCACAGGCTTGTTAAAATGTGAAGCAGGCATGGAAAAA
181ATAATTAGCAAACCAACAGGAATGATGATCGAGCTTACGTATGAGATCCCAGGGCAGATA
241AATATGGATGTTGAAATGTCTTCTCCTGCAATTAGATTATATTTTAAGACTGTAAGCTCA
301AAAATATTCATTCACTGCAAAAAATGTACACAAGAAAAGCTAACTAACTCAGCCAAAAAA
361GGTAAAAAAAAGGGAGTGGAAGGTGGGCCATGCTCGCATTCAATTTACTGCCTATAATAA
421GTAACAATACGCCAATACAGAGAGAAATTGCAATTTGATTCAATTGCAAGAGCTTAATAA
481CCTGAAGCACATGATCAACCCGACCATCTGGTGAACCTGTCAACCTTTCCATCATCATGG
541AACCATACGATCTTTCTTCCTCCTCAGTTTTCTCACCATCATCTAAATAATAATAATGAT
             >>>>>>>>>>>>>>>>>>>>>                           
601CAGAATACTGCTTGTTTGCTGCTTGGAATGTGTAAAAGCTAATAAAAGCTTGATTTAACG
661GTACCTTCCGTGTCATTTTTGCTCAGTGATAGCAAAGCAGCTACTGCTTTAACCTAAACA
                        <<<<<<<<<<<<<<<<<<<<<                
721AAACATACAAACCAACTCATTAAGCAAGAGCTATGCTAGCAGTTCTCCATCATTCACAAG
781CGTCAAAGATTGATGTATCAAAGGAAACCTAGATCCACATAATCGCTTTCGAATTGTATG
841AATTAAATGTAAATGCAACACATCAGCATTCCGGAATAAATAGCAACCTTCAATGACTTG
901AACTGA
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0