Sequence ID: DB090H12_F1.ab1

Motif:(CATG)3
Motif length:4
SSR:CATGCATGCATG
SSR length:12

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD7102154.9647.623.000.00GTAGTCTCACCTTTCCCTTGT1399019014.003.00
 REVERSE8482154.2842.864.001.00CTAAGTGCCAAGATTGAAGAC

Primer view:

1AATTGTTATTAGGTTTTCTTTACAGCATCTAGAATTTACCTTCTCTCTATCCGTACTGTA
61ATTTTTGTACACGAAATTTGGATGATTCTCAGATTTAGGCATTTAGCCCGTGCGAAGTTT
121TGCTGCATCCAAAAGTGGTCTTCTTTCTATTCGTACAGAATTCTTGTGCACAGATTTTTG
181AATGATTCATAGATTTGGCACATGTGGAATTTTGTTGGTGTGATGTGCAAGATGTGCAGA
241TTTCAATGACTGGCACAAATGTTAGAATGGAGTACGCCAGGGACGAAATGGTTGGCACAA
301CAGTGATAGTTACCAAAAGAGATTAATCATGTACTGATTGTGTTCCTTTTCAATCCATGT
361GTTCCCTCTCTCTAAATCCATTTTCTTCTCAATCCATGTGTTTTCTATCTCTCTCAATCC
421ATGTGTTCTTGAGTTAGAAGGCCTGAATTTTGCCTTCGTTGCCCCATATGCCATCCATGT
481CCTTGTTCTCTGCTAAGTTGAGCTCCAATAGACCAAAAAAAGGTGAAGTGGAGAGATCGT
541CTTGGTGATATGGAGCACCCGATCCGATCAAGGACATACACAATGATTGTGGGGTCATAG
601TACTAGGTACCGTCCTTTTGCATGCCATTACGTCAATGGCATTTTTCATTGCCGTCTACT
661CCGCGTCAAATGATGGAGGGCTGGGATAGTTGGAGCAATAAGCTCGAGAGTAGTCTCACC
                                                   >>>>>>>>>>
721TTTCCCTTGTTACGGAGTACTAGATCGAAGAACTAACAGCTGTCATGCATGCATGAACAG
 >>>>>>>>>>>                                                 
781CCCAAAGGGCTTTATATTCAAAGCAACCGAGTAGCACGACGTACGGAGTCTTCAATCTTG
                                                <<<<<<<<<<<<<
841GCACTTAGCAAATGCCTTTGATCCACAACCCCTTTCAGTCTGCGGAGATGCCAAACTTAA
 <<<<<<<<                                                    
901T
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0