Sequence ID: DB079C21_F1.ab1

Motif:(CAG)4
Motif length:3
SSR:CAGCAGCAGCAG
SSR length:12

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD841855.1755.564.001.00ACCACTCCAGTAGCAGCA1748998994.002.00
 REVERSE2572055.0840.008.000.00TTCTTTCCATGGATGTTCTC

Primer view:

1GCGCGGACCCACTTGCTGCTGCTGCTGCTGCTGCGATGCGAGGGACACCACGAGGCCTGG
61CCAAGGACGGCGCTGCCACGTGCACCACTCCAGTAGCAGCAGTGCGCTCTTGGTCTCCCA
                         >>>>>>>>>>>>>>>>>>                  
121GCAGCAGCAGCATCATCAGCCACACGGGGAGTGTGCCGGCCGGTGCCTCGGCCGCATCGC
181CCCCAGATCGCTGGCCAGGCCTGGCCCTGGCCGGCCGCGTGCGCTGCGTCGAGTCCCGAG
                                                          <<<
241AACATCCATGGAAAGAACGAAATGCACTGCTCCCCGGAGAGGGCCCGAGCTAGGAGGCCA
 <<<<<<<<<<<<<<<<<                                           
301CCGCAACGTTCCCCTTGCCTTTCCGCCACCGACGGCACGAGCGATGATGTCGTGTGCCGT
361GGTGCACCGGAACGGGAGACCACACTACGTACTGGCCGGCCGGCAGGCCAATACTAGTAC
421ATGCCATGTGCTCTTCTGTCTGTCTCGGTACCACCAGCCCGCATCGATCTATCATCGATC
481CCCGGGTTGGGCACACAGTAAAACAGTCCCGTCATCTCAACACACAACCACCATGGGGGG
541CCAAGGAGCTAGCGAAAGAGCAAAAGTGCTTGTTGGATGGCCTCCTCCCGCTGAACCGCG
601CAGTACGGCAGCACGAGTGTGAGACTGAGTGGCTCCTCCATTGTCCATTCGGGGGAACAC
661GACTTGGACAACATCGTTTCATTTTCTTTTCTTTTGGCGCACACGTTGGGTTGACTGACG
721ACGGTTCCGGCGACCACGCCACGTACGCGTGCGACGACGGGCCGCTGGTTCGGTACACTG
781AACCAGACGGAGTAGTGCCACTTCCTCTTCCTCCCCGAGTCCCTGATCGTGACACTATCC
841CACACACACACACACACACGGGGCAGAGGGAGGCCTGCTTTTCATTTTCAGCTCACATA
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0