Sequence ID: DB079C21_F1.ab1

Motif:(CACA)4
Motif length:4
SSR:CACACACACACACACA
SSR length:16

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD7742155.8647.623.002.00TACACTGAACCAGACGGAGTA1238998993.000.00
 REVERSE8962055.2440.004.002.00GTGAGCTGAAAATGAAAAGC

Primer view:

1GCGCGGACCCACTTGCTGCTGCTGCTGCTGCTGCGATGCGAGGGACACCACGAGGCCTGG
61CCAAGGACGGCGCTGCCACGTGCACCACTCCAGTAGCAGCAGTGCGCTCTTGGTCTCCCA
121GCAGCAGCAGCATCATCAGCCACACGGGGAGTGTGCCGGCCGGTGCCTCGGCCGCATCGC
181CCCCAGATCGCTGGCCAGGCCTGGCCCTGGCCGGCCGCGTGCGCTGCGTCGAGTCCCGAG
241AACATCCATGGAAAGAACGAAATGCACTGCTCCCCGGAGAGGGCCCGAGCTAGGAGGCCA
301CCGCAACGTTCCCCTTGCCTTTCCGCCACCGACGGCACGAGCGATGATGTCGTGTGCCGT
361GGTGCACCGGAACGGGAGACCACACTACGTACTGGCCGGCCGGCAGGCCAATACTAGTAC
421ATGCCATGTGCTCTTCTGTCTGTCTCGGTACCACCAGCCCGCATCGATCTATCATCGATC
481CCCGGGTTGGGCACACAGTAAAACAGTCCCGTCATCTCAACACACAACCACCATGGGGGG
541CCAAGGAGCTAGCGAAAGAGCAAAAGTGCTTGTTGGATGGCCTCCTCCCGCTGAACCGCG
601CAGTACGGCAGCACGAGTGTGAGACTGAGTGGCTCCTCCATTGTCCATTCGGGGGAACAC
661GACTTGGACAACATCGTTTCATTTTCTTTTCTTTTGGCGCACACGTTGGGTTGACTGACG
721ACGGTTCCGGCGACCACGCCACGTACGCGTGCGACGACGGGCCGCTGGTTCGGTACACTG
                                                       >>>>>>
781AACCAGACGGAGTAGTGCCACTTCCTCTTCCTCCCCGAGTCCCTGATCGTGACACTATCC
 >>>>>>>>>>>>>>>                                             
841CACACACACACACACACACGGGGCAGAGGGAGGCCTGCTTTTCATTTTCAGCTCACATA
                                     <<<<<<<<<<<<<<<<<<<<    
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0