Sequence ID: DB080K19_R1.ab1

Motif:(CTCT)3
Motif length:4
SSR:CTCTCTCTCTCT
SSR length:12

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD6752155.2542.866.000.00CGATTAATAGAGGAGGGAGAA1528988984.003.00
 REVERSE8262254.9140.916.002.00AGTTTGCCCAGGTATACTTCTA

Primer view:

1AGGATCCACGCTGCTCTGGTACACGCCTGCAAAACATTCCATTACAGACAAGATACTGAA
61GAATCAATTCCCCTCCTCGCTCTACAGCACCAAAAAACAAAAACAAAAAACTAACCATTG
121TTAACAGAAACTAAAAAAGAAGAAGCAGAAAATTCATGTTGATTTTTACTCACCATCGAT
181CTTGCTGAGCACCTTCTTGACCTTCTTGTTACAACCGTCGCAGTGGATGTTGACCTTGAA
241CACGCATGTCTGCAAAGGGTTTGGGGATGAATTCACAGGGTGCAAGATGATGGGAATGGG
301AGCAGCAAGCAAGAAGAAATGTCTGCAGCAAACGAAGAAGGAGAAGAAGAGTTGGAAGAA
361CTGACCTGAATCTTGAGCACCTCCTCCTTGCTCATCACTGACTCCCTGCCTTCCTTTGCT
421CCCACTGAGGACTGAGGCCTCGCTCGAACTCAGCCTCAGACTCAGATCAGGGCGTGGAGA
481AGCAGAGGGCCAGCCACCATTGCTCCTGTCTCTTTCTCTCTTCTGTCTTCTCACACAAAC
541CACAACGAAGAAGGAGAAACAGAAACGGGCTTTGGGTGTGGCACTCACGCAAAGAGCAAG
601GGTGCTCGTGACTTGTGAGAGTGTGTTTGCTACTGCTGCGCTTGAAGAATGAAGAGAGCC
661ATGATAAAGTACCGCGATTAATAGAGGAGGGAGAAAGAAGCCACCTCTCTCTCTCTCTAA
                >>>>>>>>>>>>>>>>>>>>>                        
721GATCAGCTCCTTGAAGGTTTCTTTGCTCTTTTGGGCTGCCTTTGGAAACGGAAGCCCTTC
781TTTCCGGCCACCGAGTAACGTATCTAGAAGTATACCTGGGCAAACTCCGGGCTGGGCCGG
                         <<<<<<<<<<<<<<<<<<<<<<              
841GATTTATAAAAGCGCGACAGTCAAACCTGAAGCTCGAGCTCGGCCTGGTCCGGCCCGA
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0