Sequence ID: DB091M22_R1.ab1

Motif:(ATTA)3
Motif length:4
SSR:ATTAATTAATTA
SSR length:12

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD4622255.1640.914.002.00CATTCTGTTTGAAGACGTACAG1478988984.001.00
 REVERSE6082155.0442.864.001.00CAATCTACATAGCCCAGTTTG

Primer view:

1GTCGACTCTGAGGATCCAAGTAATATTACGAACTTGGCCACTTGACTGCTCAAATAAACA
61CACACAGAGAGGAGTTAAGTATCTGGGCACCAAAGATACGGATGGATCGGCACTGGCTTT
121CTCTCTCCTACGTCAGTGGTCCCCCAGCTGCTGAGGTCATAGTGCTGTTAACGCGGAGAG
181GGCTTGAAGATTCCTGCACCTGGTCAGCTTCCACGTTGCTTCGCCAATGCACGCCCAAAA
241TAGAACCTCTGACTTCTCCCACAAAATCAACGAAACCCCACTAAATTTTTAATCCCTCTA
301GAAACAGGCTCCGCTTTACCACGCAAGACGATAAGCCTTTTCCGTGAGCGCAAAGCGAGC
361AGAGCATGTCAAGGACACAAAAACTGAATTGATTAACTTTCTCTCATCAGTCGAAGATCC
421ACGTACGTACAGCTCTATTAATTTCCAGTAGCATATTAGTACATTCTGTTTGAAGACGTA
                                           >>>>>>>>>>>>>>>>>>
481CAGAAGAAAAGGCCAGATTAATTAATTAATTCATTATACTTTAAAGCATATTAGCTCAAT
 >>>>                                                        
541GGATCGGACACGAATAACGGCGGAAGAAATGCTTGAAACGCACATGACAAACTGGGCTAT
                                                <<<<<<<<<<<<<
601GTAGATTGTTGAAGATTACGGTATCAACTATCAACAGCAACATATGAATATATAAACAGT
 <<<<<<<<                                                    
661TGAGAAAGAAGTGCAGACACATGTATCTATGGCTAAACGACAACTTGGGATTTTACAATA
721TTTGTTCTTCCCGTAGTAGCTTATAGTTTGTACAGATATATAAATAGATCCATTGGATCG
781ATGATTGCAGGAGCAGCTGCTAATGTGGTTCCTGTTCAGGCATGCAAAGGGGCAAGGTTG
841AATTGGTCAGCCAGCATCAGGGGCAACTGACCTTAAAAATTCCCCATCTCTTTGCCCC
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0