Sequence ID: DB078M04_R1.ab1

Motif:(TTC)5
Motif length:3
SSR:TTCTTCTTCTTCTTC
SSR length:15

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD1822154.8542.863.002.00CTTCTTGTTCTGCCATCTCTA1488938935.001.00
 REVERSE3292055.0140.006.000.00GCCTCTGTTAAGAAAAGCAA

Primer view:

1CATTGCCATACAAAAATTTGAACCTTCATTACATTTCGGTAATAGGCGCTAAACTACTAT
61TACTACTCGTCCTCATCAGTTTTGGATTTCTTCTTCTTTTTCTTCTTCCCTTCAGTGCCA
121CCAGTCTTAGGCTCAGCATCCTCAGAAACATCCCGGTTCTTCTTTTTCTTCTTGGGGGTC
181TCTTCTTGTTCTGCCATCTCTACATCCTCCAGCTTGTGCTTCTTTTTCTTCTTCTTCTTC
   >>>>>>>>>>>>>>>>>>>>>                                     
241TCTGTTTCAGGTTCAGCTTCTGCAGCGCCATTGTCAACATCCATTGCCTCAGTTTTAGAC
301TTCTTTTTCTTGCTTTTCTTAACAGAGGCATCACCATTCTCTTTGTCTGCAAAAGAATTT
          <<<<<<<<<<<<<<<<<<<<                               
361TGGGGTACACATTGGAAGTACAAATTAATGCGGACTGACAAAATATGCCACGACAACAGG
421TGATTTTACTTGAACTAATGAAATAAGAGATGCATCCTTACCGTCACCATTCTCTGAGAC
481TGCGCTTGTCATGCCCTCAATAGCAGCTTTCATCACATCAAGGTTCTTACGTGGTGCAAC
541ACCCTTGTCATAAAAGTCTAGTCTCTCCTCAACTTGTTCGCGCAGCTTCTGGCCAAAAAT
601GGAGCTGCTCAAATCTGCAATTCAGAACCCAGTGAGAAAACAATCATAAAAAGGGAGTCA
661GAATGTGTAACATTTGCAAACTAAATCCTTCAACTAACCAGAATAGCAGTCAATGCGAGA
721GGCAATGGAACATTTGTTCGCCAGGTATCGAGCCATTCTTCCCTTGTTCTTAGTTGATGC
781ACGGCCAATAAAAGATGAATGGAATATGAGGCCATACTTTGGTGTGTTTCCACGTGTTTT
841AAGAGCCCTGTAATAGAATTAGGAAATCAATCATGAAACATCAGAAGCATGAA
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0