Sequence ID: DH031N02_F1.ab1

Motif:(TGCA)5
Motif length:4
SSR:TGCATGCATGCATGCATGCA
SSR length:20

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD3072155.1142.864.002.00GGGATTAGCTGTTGTAAAGGT1338918914.003.00
 REVERSE4392156.5342.862.002.00CAGTTTCTTCATTTCCTACGG

Primer view:

1CTTTTCCAGCCCCTGCCTCGTCAACAACATCATGTGCCAAAATTTCATTCAATTCTGCAA
61TGAGTTTTTGGACCTGGAAAAGACACATAATGATATCAGCAACGCAATCCATGACAGCAC
121AAAACTGAAGAAGGCATAAAGATTGGCAAACCTCTGGGATGAAATCAATGAGGCCCTCTG
181GGATAAGGATAACACCGTAGTTGTAACCAAGTTCTGCACGCTTGCAGATAATATCAGTAA
241TATAGTCTGTGACATTCTTTAGTGTTTCCTTCTTCTCAGCGACCTGTATTAATGCATTCA
301AAGTACGGGATTAGCTGTTGTAAAGGTACACAAGTTTGCATGCATGCATGCATGCAACCT
        >>>>>>>>>>>>>>>>>>>>>                                
361ATAGTTCCCGACAATTTTATCAAAAATATGTGAGCTAACATATAAGAATTAAGAAGTTCC
                                                           <<
421GTAGGAAATGAAGAAACTGAAATGTGCAACATAAGAAAAGAAAATATGGGTAAAGTGCAC
 <<<<<<<<<<<<<<<<<<<                                         
481AGAATTTCTTTTTTCATCCTGTGTACCATTATCTCGCTAATCTAACCAGAAAAATGGTGG
541AATGAGATAATATAAACTGAACATAGACTTATAATGAACTTTATATATAAAGAGTTTCAA
601ACCTCCTCGCCGATGAGTGCAACATTAGGGTGTGTTTGCAGAGCACACTCTAAAGTAATG
661TGGGAAGCAGCACGGCCCATAAGCCTCACAACTGCATGGCCATGGCAAATATATATTAGC
721AGGTGAACAAACGAAATGATAAAACATGTTAAAATGGATCATCGATTAAACATGTTAAAA
781ACAGATCATCTATCATTCATGTACCAAGGATGATAAATGTTTGTAGTATGCCATACAACA
841CTATGAGAATGTTGGCATCAAAGACACTACTTAGAATAAAAGATAGGATCA
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0