Sequence ID: DB096B10_R1.ab1

Motif:(GCC)4
Motif length:3
SSR:GCCGCCGCCGCC
SSR length:12

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD501954.6557.891.001.00CACAGAGGGAGGAAGAGAC1299289284.001.00
 REVERSE1781954.5552.636.002.00GGATCCTGGAGGCTATATG

Primer view:

1TCGACTCTGAGGATCCCCTCAGCCCAGGCCATCAGGCCCAATACGCAGGCACAGAGGGAG
                                                   >>>>>>>>>>
61GAAGAGACCGGTCGAACGGGACTCCCGACTACTGCTTGCTGTGTGCGTGTGGGACCCGAG
 >>>>>>>>>                                                   
121AGGCCGCCGCCGCCGCAGTCCGCCGCCGCCGCCGCCGCTCATATAGCCTCCAGGATCCCC
                                        <<<<<<<<<<<<<<<<<<<  
181CCGTACTCCCTCGCATCGCCTAGTCAGATGCGGCCGGCGGCTTCCCCCGTCCCCGCCCGC
241GGCGCTAGGTCGCCGCCAGCTTGGCCCTGAGCTCGCCGTCCTGCAGTCCTGCCTCCCTGC
301CCTGCCCCGGTGCTCCCCCGACTCGGCGACTCCCACTTCCAGTACTCAATCGGCTTCGCC
361CCAATCGGTAATGCGCACTTTCCTCCCACTTTGCTTGCTCATCTGCGGCTCTGCCCACTG
421CTCTCTCCCCCCAAAATCTCTGTTCTTTAGTTCAGGACTACGGAGTACTTGATGACTGTA
481CAAATCAAAGTATTGTGTGATGAGTCGAGTACAAATCAAATGAATATGTGATGAATCGAT
541ATTCCCCTTCGAGAATTTGTTGTTCCGGTTTAATTTTGCACAAATCAAGTGAATATGTGA
601TGAGTCGAACGTCTTGAAGATTTAATCACGGGGGCCTCGGATCAATCAACCCTTTGATTT
661GGTATGTTGTCTTTTGCTATCTACAGTATTACATCAATAGTTGAACCATTTAATATTTGC
721GTCCAAATAATTAGCAATTATCTTGGAATTATTTGGCCCCGGGTGGGAGCATTCCCTGGC
781TCTGCTGTTGGGTTCAGTCGCCCTGTGGAGTGTGGCCTACTCCTATGTCAGGAGAGGGAG
841TGAGCGAGGGGTTGATCAGTCGTTCGAGCCCGATGATGAATGAATAACTTACCCCTTTTT
901TCGGTTTAATGGGACATAAAAACATCTT
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0