Sequence ID: DB090B06_F1.ab1

Motif:(AGC)4
Motif length:3
SSR:AGCAGCAGCAGC
SSR length:12

SSR flanking primers:

OrientationStartLenTmGC%Any3'Primer SeqProduct SizeSeq SizeIncluded SizePair_anyPair_3'
1FORWARD6192055.3550.003.002.00GTAGCAGCACCCTGTTGTAT1569279275.001.00
 REVERSE7742154.6442.865.001.00GTGCAGACAACTTCTTTCACT

Primer view:

1ATATCTGAAAACACCAAAAAAAACCAACAATCTTTCAGTCAGCACGGGACTAGCTAGATC
61GACGGGTTCGACAGAAGGAGAACCCAAATTAACGAGACGGATGGACATTGATTTCTCCTT
121ACCATCTTCTTCTGAATCGCCGGCATCGGCGACGCCGCGACCTGTCGATCGAGCTTCTGC
181CAGGCATCGGACATGTCGCAGGCGGACTTGAGGCAAACGGGACACGAGAACCTGAGAGGA
241AAAAATGTCGCATATATGCTGACACCATGTTCATGGGGTAATTAAGTCTATCTGACCCTG
301TGTCTGTGTGGATATAGATATACTTACCGTCGATGTGCTCTCATCTCGCGGAGGCATTCC
361ACGTGGATCATGTGCCCGCACCGCAGCACGTTGATATCTCTCGCCGACTCGAACATGTAC
421TGTAGCAGAAATCAGATAAAGGGGAAGCCGAAGCAAAAAGCAAAAATTCAATCAGAAACA
481GGGGAATTCAAATTCTTTGCTGAAGATGATCTCTCTGGAGTCTGAGTCCGGAAGAAAGAT
541GTTCACCTCGAAGCATATAGGGCAGTTCTGGTGCATTGCCCTATCGACGCAGCGATGGGA
601ATCCTTCAGCACGAAGCTGTAGCAGCACCCTGTTGTATACACAGGCTCAGTGCAACGATG
                    >>>>>>>>>>>>>>>>>>>>                     
661CAGACTTGTTAGCAGCAGCAGCAAAGGATTCAGTAACTTGAGTATAAGTCCATTTGGCAC
721CAAGAAGGAAGGTTTAGGTACCGCATTTCTCGCAGTGAAAGAAGTTGTCTGCACCGCCGG
                                  <<<<<<<<<<<<<<<<<<<<<      
781TTCTGCGAAAGACGGAGTACAATTGTAAACTAGGATTTGGTATTGGCCTATTATGGTAAA
841TTACAAGGGGTGATATGTCAATGCAGATACAGCACTACTTAGCGCTTGCCTGCATATGCC
901GCATCTGTCGCAGTGAAACTGGTTCTT
Outer forward primer:>>>>>>>>>>
Outer reverse primer:<<<<<<<<<<
Oligo primer:^^^^^^^^^^
Forward SBE/Allele primer:Blue
Reverse SBE/allele primer:Brown
Target:Red
Included region:Green
excluded region:Orange

Primer3Batch v1.0