CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-3B Physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Physical-3B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
baccontig
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - 3B Physical [ View Map Set Info ]
Map Name: Physical-3B
Map Start: -46.80
Map Stop: 203.80
Features by Type:
428 baccontig
1,270 locus
1,698 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 1,698.       of 68 | Next
Wheat ABD - 3B Physical - Physical-3B
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
cfa2191 locus -46.80 No other positions
cfp3131 locus -26.00 No other positions
gpw8100 locus -1.50 No other positions
cfp54 locus -0.60 No other positions
psr913 locus -0.52 No other positions
wb75 locus -0.52 No other positions
wb147 locus -0.52 No other positions
wb133 locus -0.52 No other positions
psr345 locus -0.52 No other positions
fba311 locus -0.50 No other positions
bcd907 locus -0.50 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 bcd907 locus 44.48 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 BCD907 locus 142.00 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-3H BCD907 locus 0.00 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-3H BCD907 locus 0.00 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H bcd907 locus 0.00 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-3H BCD907 locus 2.00 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H BCD907 locus 44.48 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H BCD907 locus 0.00 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-3H bcd907 locus 0.00 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-3H bcd907 locus 0.00 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H BCD907 locus 44.48 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H bcd907 locus 1.30 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-3H BCD907 locus 0.00 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-3H BCD907 locus 0.00 () Automated name-based View Maps
gwm389 locus 0.00 No other positions
sts15 locus 0.00 No other positions
sts1 locus 1.83 No other positions
fbb147 locus 113.24 No other positions
ksuG30 locus 1.83 No other positions
cfp3132 locus 2.80 No other positions
barc238 locus 2.81 No other positions
cfp140 locus 3.40 No other positions
sun2 locus 3.67 No other positions
darts289 locus 3.92 No other positions
darts173 locus 3.92 No other positions
darts336 locus 3.92 No other positions
darts303 locus 3.92 No other positions
darts144 locus 3.92 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.