CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, Consensus 2006, DArT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Consensus2006-DArT-4H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, Consensus 2006, DArT [ View Map Set Info ]
Map Name: Hordeum-Consensus2006-DArT-4H
Map Start: 0.00
Map Stop: 148.60
Features by Type:
278 locus
278 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 278.       of 12 | Next
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-4H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
bPb-3717 locus 148.60 No other positions
bPt-5438 locus 146.20 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-5438 locus 145.20 () Automated name-based View Maps
bPt-4156 locus 145.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-4156 locus 144.10 () Automated name-based View Maps
bPt-0885 locus 145.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-0885 locus 143.60 () Automated name-based View Maps
HvGlyT5 locus 142.10 No other positions
bPt-8524 locus 142.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-8524 locus 142.80 () Automated name-based View Maps
bPt-8101 locus 142.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-8101 locus 140.40 () Automated name-based View Maps
bPt-6348 locus 142.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-6348 locus 142.80 () Automated name-based View Maps
bPt-4717 locus 142.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-4717 locus 142.80 () Automated name-based View Maps
bPt-4259 locus 142.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-4259 locus 140.40 () Automated name-based View Maps
bPt-2843 locus 142.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-2843 locus 142.50 () Automated name-based View Maps
bPt-0318 locus 142.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-0318 locus 142.80 () Automated name-based View Maps
bPb-9820 locus 142.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPb-9820 locus 140.50 () Automated name-based View Maps
AnionT2b locus 136.10 No other positions
ABC305a locus 136.10 No other positions
bPb-3468 locus 136.10 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H bPb-3468 locus 115.04 () Automated name-based View Maps
Bmag419 locus 132.90 Barley - Barley consensus 2003 - Barley-consensus-2003-4H Bmag419 locus 86.00 () Automated name-based View Maps
HvGSL1 locus 130.80 No other positions
ksuE2 locus 124.00 Barley - Barley, CxH - Hordeum-CxH-4H ksuE2 locus 101.68 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-4H ksuE2 locus 68.70 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-4H ksuE2 locus 125.93 () Automated name-based View Maps
bPb-1166 locus 123.20 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H bPb-1166 locus 101.90 () Automated name-based View Maps
bPt-6555 locus 121.70 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-6555 locus 115.10 () Automated name-based View Maps
bPt-4648 locus 120.70 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPt-4648 locus 114.20 () Automated name-based View Maps
MWG42b locus 120.20 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H MWG42B locus 7.72 () Automated name-based View Maps
bPb-9867 locus 120.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPb-9867 locus 112.40 () Automated name-based View Maps
bPb-6107 locus 120.10 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H bPb-6107 locus 111.60 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.