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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Barley-Barley, Consensus 2007, SSR
(Reference Set)
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Correspondences
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Maps Hordeum-Consensus2007-SSR-2H
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
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Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, Consensus 2007, SSR [ View Map Set Info ]
Map Name: Hordeum-Consensus2007-SSR-2H
Map Start: 2.40
Map Stop: 156.49
Features by Type:
320 locus
320 Total

Map Features

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Items 1 to 25 of 320.       of 13 | Next
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-2H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GBM1421 locus 156.38 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBM1421 locus 153.00 () Automated name-based View Maps
GBM1149 locus 107.89 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBM1149 locus 105.30 () Automated name-based View Maps
GBM1309 locus 107.18 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBM1309 locus 104.00 () Automated name-based View Maps
GBM1365 locus 80.06 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBM1365 locus 76.10 () Automated name-based View Maps
GBM1218 locus 72.46 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBM1218 locus 69.00 () Automated name-based View Maps
GBM1119 locus 72.09 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBM1119 locus 61.60 () Automated name-based View Maps
Bmag0742 locus 72.01 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H Bmag0742 locus 69.10 () Automated name-based View Maps
HvKASI locus 67.01 No other positions
GBM1523 locus 49.26 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBM1523 locus 43.90 () Automated name-based View Maps
GBM1281 locus 20.79 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBM1281 locus 19.00 () Automated name-based View Maps
Bmag0113e locus 79.78 Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-2H Bmag0113e locus 85.72 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-2H Bmag0113e locus 78.80 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-2H Bmag0113e locus 77.90 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H Bmag0113e locus 71.90 () Automated name-based View Maps
Bmag0571d locus 76.57 Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-2H Bmag0571d locus 68.41 () Automated name-based View Maps
Bmac0578 locus 67.01 Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-2H Bmac0578 locus 63.18 () Automated name-based View Maps
ABC165A locus 135.78 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H ABC165A locus 132.40 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H ABC165A locus 135.78 () Automated name-based View Maps
GBMS040 locus 118.53 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBMS040 locus 121.30 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H GBMS040 locus 118.53 () Automated name-based View Maps
Bmac0144i locus 89.83 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H Bmac0144i locus 89.83 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H Bmac0144i locus 87.60 () Automated name-based View Maps
Bmac0144f locus 86.13 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H Bmac0144f locus 77.00 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-2H Bmac0144f locus 84.10 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-2H Bmac0144f locus 94.00 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-2H Bmac0144f locus 84.80 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H Bmac0144f locus 86.13 () Automated name-based View Maps
GBMS075b locus 76.90 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H GBMS075b locus 76.90 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBMS075b locus 73.10 () Automated name-based View Maps
GBMS095 locus 75.43 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBMS095 locus 71.10 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H GBMS095 locus 75.43 () Automated name-based View Maps
GBMS011 locus 69.72 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBMS011 locus 66.90 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H GBMS011 locus 69.72 () Automated name-based View Maps
Bmac0218a locus 51.14 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H Bmac0218a locus 45.70 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H Bmac0218a locus 51.14 () Automated name-based View Maps
GBMS066 locus 46.61 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBMS066 locus 44.10 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H GBMS066 locus 46.61 () Automated name-based View Maps
GBMS002 locus 37.94 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBMS002 locus 31.80 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H GBMS002 locus 37.94 () Automated name-based View Maps
GBMS090 locus 25.67 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H GBMS090 locus 25.67 () Automated name-based View Maps
GBMS031 locus 11.84 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H GBMS031 locus 9.80 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H GBMS031 locus 11.84 () Automated name-based View Maps

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