CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, Consensus 2007, SSR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Consensus2007-SSR-7H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, Consensus 2007, SSR [ View Map Set Info ]
Map Name: Hordeum-Consensus2007-SSR-7H
Map Start: 0.00
Map Stop: 157.12
Features by Type:
308 locus
308 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 308.       of 13 | Next
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-7H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Bmag0004b locus 146.28 No other positions
GBM1456 locus 136.79 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBM1456 locus 137.10 () Automated name-based View Maps
GBM1419 locus 95.75 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBM1419 locus 98.60 () Automated name-based View Maps
GBM1359 locus 85.80 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBM1359 locus 87.70 () Automated name-based View Maps
GBM1494 locus 84.28 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBM1494 locus 86.00 () Automated name-based View Maps
Bmag0900 locus 75.68 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H Bmag0900 locus 85.00 () Automated name-based View Maps
GBM1432 locus 72.81 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBM1432 locus 75.10 () Automated name-based View Maps
GBM1033 locus 67.13 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBM1033 locus 67.40 () Automated name-based View Maps
GBM1116 locus 50.57 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBM1116 locus 49.80 () Automated name-based View Maps
HvWaxyG locus 21.80 Barley - Barley consensus 2003 - Barley-consensus-2003-7H HvWaxyG locus 24.30 () Automated name-based View Maps
HVM05 locus 148.22 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H HVM05 locus 148.22 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H HVM05 locus 148.10 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-7H HVM05 locus 210.80 () Automated name-based View Maps
GBMS088 locus 111.32 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H GBMS088 locus 111.32 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBMS088 locus 113.30 () Automated name-based View Maps
GBMS063b locus 84.28 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBMS063b locus 85.50 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H GBMS063b locus 84.28 () Automated name-based View Maps
Bmac0047d locus 81.80 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H Bmac0047d locus 81.80 () Automated name-based View Maps
Bmac0303a locus 81.53 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H Bmac0303a locus 81.53 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H Bmac0303a locus 83.80 () Automated name-based View Maps
GBMS003 locus 80.80 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBMS003 locus 81.60 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H GBMS003 locus 80.80 () Automated name-based View Maps
GBMS041 locus 78.98 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H GBMS041 locus 78.98 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBMS041 locus 83.70 () Automated name-based View Maps
Bmac0273e locus 73.18 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H Bmac0273e locus 73.18 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H Bmac0273e locus 80.60 () Automated name-based View Maps
Bmac0303e locus 72.93 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H Bmac0303e locus 77.30 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H Bmac0303e locus 72.93 () Automated name-based View Maps
Bmac0144j locus 71.48 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H Bmac0144j locus 71.48 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H Bmac0144j locus 72.40 () Automated name-based View Maps
E35M62-52 locus 51.52 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H E35M62-52 locus 51.50 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H E35M62-52 locus 51.52 () Automated name-based View Maps
GBMS035 locus 46.85 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H GBMS035 locus 46.85 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBMS035 locus 49.00 () Automated name-based View Maps
GBMS139a locus 31.17 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBMS139a locus 38.40 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H GBMS139a locus 31.17 () Automated name-based View Maps
GBMS094 locus 22.89 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H GBMS094 locus 22.40 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H GBMS094 locus 22.89 () Automated name-based View Maps
HVM04 locus 22.19 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H HVM04 locus 22.70 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H HVM04 locus 22.19 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.