*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, HxM/QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-HxM-base-1H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, HxM/QTL [ View Map Set Info ]
Map Name: Hordeum-HxM-base-1H
Map Start: 0
Map Stop: 125.2
Features by Type:
14 locus
5 qtl
19 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 19 of 19.
Barley - Barley, HxM/QTL - Hordeum-HxM-base-1H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
CDO99 locus 21.5 Barley - Barley, SxM - Hordeum-NABGMP1-1H CDO99 locus 31.6 () Automated name-based View Maps
Barley - Barley, Cali-sib x BowmanBC, QTL - Hordeum-CxB-1H CDO99 locus 36.6 () Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-1H CDO99 locus 40.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO99 locus 88.7 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-1H CDO99 locus 31.6 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-1 CDO99 locus 143.85 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-8 CDO99 locus 93.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 CDO99 locus 14.9 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-1H CDO99 locus 59.1 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H CDO99 locus -9.5 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H CDO99 locus 49.01 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H CDO099 locus 42.87 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H CDO99 locus 50.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO99 locus 88.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 CDO99 locus 41 (cM) Automated name-based View Maps
Centromere-1H locus 54 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-1 Centromere-1H locus 38.5 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-1H Centromere-1H locus 60 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-1H Centromere-1H locus 57 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-1H Centromere-1H locus 102.8 - 105.8 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-1H Centromere-1H locus 48.8 - 55.7 () Automated name-based View Maps
ABG452 locus 47.1 Barley - Barley consensus 2 - Barley-Consensus2-1H ABG452 locus 73.6 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-1H ABG452 locus 97.1 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H ABG452 locus 68.27 () Automated name-based View Maps
Barley - Barley, Dicktoo x Morex - Hordeum-DxM-1H ABG452 locus 65 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H ABG452 locus 68.27 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A abg452 locus 27.7 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-1A Xabg452 locus 3.9 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H ABG452 locus 67.2 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 ABG452 locus 68.27 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H ABG452 locus 74.87 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-1H ABG452 locus 61.06 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H ABG452 locus 61.6 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H ABG452 locus 12.7 () Automated name-based View Maps
MWG912 locus 125.2 Barley - Barley, SxM - Hordeum-NABGMP1-1H MWG912 locus 146.3 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A mwg912 locus 83.7 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H MWG912 locus 153.32 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H MWG912 locus 107.3 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H MWG912 locus 138.4 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-1H MWG912 locus 132.6 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-1H MWG912 locus 133.37 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B mwg912 locus 96.3 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H MWG912 locus 199.04 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H MWG912 locus 145.72 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-1H MWG912 locus 136.2 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 MWG912 locus 145.72 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-1H MWG912 locus 169.3 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-1H MWG912 locus 136.75 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H MWG912 locus 154 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-1H MWG912 locus 148 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-1H MWG912 locus 159.9 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-1H MWG912 locus 141.4 () Automated name-based View Maps
Barley - Barley, IxF, Stein2006 - Hv-IxF-Stein-1H MWG912-1H locus 129.21 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-1H MWG912 locus 157.4 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-1H MWG912 locus 129.7 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-1H MWG912 locus 146.3 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-1H MWG912 locus 133.8 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H MWG912 locus 153.01 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H MWG912 locus 145.72 () Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-1H MWG912 locus -56.8 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-1H MWG912 locus 158.1 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H MWG912 locus 147.9 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-1H MWG912 locus 144.2 () Automated name-based View Maps
Ica1 locus 31.9 Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H Ica1 locus 59.8 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H Ica1 locus 53.17 () Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-1H Ica1 locus 29.4 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 Ica1 locus 53.17 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H Ica1 locus 53.17 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H Ica1 locus 0 () Automated name-based View Maps
Barley - Barley, Pilot OPA1, Consensus - Hordeum-PilotOPA1-1H Ica1 locus 44.85 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-1H Ica1 locus 43 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H Ica1 locus 55.85 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H Ica1 locus 51.3 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-1H Ica1 locus 43 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-1H Ica1 locus 46.99 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H Ica1 locus 48.3 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H Ica1 locus 60 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-1H Ica1 locus 43 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-1H Ica1 locus 46.4 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-1H Ica1 locus 46.99 () Automated name-based View Maps
Barley - Barley, Dicktoo x Morex - Hordeum-DxM-1H Ica1 locus 52.8 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-1H Ica1 locus 42.2 () Automated name-based View Maps
MWG943 locus 66.4 Barley - Barley genes - Hordeum-Genes-1H MWG943 locus 10.8 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H MWG943 locus 75 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-1H MWG943 locus 79.9 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H MWG943 locus 85.9 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-1H MWG943 locus 61 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-1H MWG943 locus 78.2 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-1H MWG943 locus 79.12 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-1H MWG943 locus 69.9 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H MWG943 locus 20.2 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H MWG943 locus 82.5 () Automated name-based View Maps
MWG938 locus 0 Wheat D - 1DS, A.tauschii, AUS x CPI - 1DS-A.tauschii-AUSxCPI Xmwg938-1D locus 5.2 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H MWG938 locus 24.4 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H MWG938 locus 6.37 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H MWG938 locus 9.8 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 MWG938 locus 14.58 () Automated name-based View Maps
Barley - Barley, Pilot OPA1, Consensus - Hordeum-PilotOPA1-1H MWG938 locus 9.26 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H MWG938 locus 14.58 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H MWG938 locus -34.7 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-1H MWG938 locus 3.4 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H MWG938 locus 13.8 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSR - Hordeum-SxM-SSR-1H MWG938 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D mwg938 locus 4.1 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-1H MWG938 locus 11.63 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-1H MWG938 locus 7.2 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-1H MWG938 locus 2.3 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B mwg938 locus 9.8 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H MWG938 locus 14.58 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-1H MWG938 locus 1.5 () Automated name-based View Maps
Barley - Barley, AxK - Hordeum-AxK-1H MWG938 locus 5.7 () Automated name-based View Maps
Barley - Barley, Igri x Franka, SSR - Hordeum-IxF-SSR-1H MWG938 locus 4.6 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-1H MWG938 locus 11.63 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H MWG938 locus 20.41 () Automated name-based View Maps
cMWG706 locus 92 Barley - Barley consensus - Barley-Consensus-1H cMWG706 locus 59.2 () Automated name-based View Maps
Barley - Barley, VxHs - Hordeum-Graner1-1H cMWG706 locus 233 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A cmwg706 locus 54 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H cMWG706A locus 114.7 () Automated name-based View Maps
ABG702B locus 106.4 Barley - Barley consensus 2003 - Barley-consensus-2003-5H ABG702B locus 30.1 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-5H ABG702B locus 115.6 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-5H ABG702B locus 124.8 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-5H ABG702B locus 155.9 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H ABG702B locus 137 () Automated name-based View Maps
ABC801 locus 3.3 Barley - Barley, BinMap 2005 - Hordeum-Bins-1H ABC801 locus 4 () Automated name-based View Maps
E33M59-222 locus 61.1 Barley - Barley, HxM/QTL - Hordeum-HxM-base-4H E33M59 locus 133.5 () Automated name-based View Maps
E39M59-354 locus 70.5 No other positions
E33M51-88 locus 83.1 No other positions
ABC159c locus 117.9 No other positions
QKp.nab-1H.1 qtl 3.2 - 21.6 No other positions
QKp.nab-1H.2 qtl 66.3 - 83.2 No other positions
QS/T.nab-1H qtl 66.3 - 83.2 No other positions
QMe.nab-1H.1 qtl 3.2 - 21.6 No other positions
QMe.nab-1H.2 qtl 91.9 - 106.5 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.