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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, IxT/QTL
(Reference Set)
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Correspondences
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Maps Hordeum-IxT/Q-3H
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, IxT/QTL [ View Map Set Info ]
Map Name: Hordeum-IxT/Q-3H
Map Start: -56.70
Map Stop: 122.00
Features by Type:
1 chromband
7 locus
3 qtl
11 Total

Map Features

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Items 1 to 11 of 11.
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-3H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr170 locus 67.40 Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xpsr170 locus 70.10 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr170 locus 2.94 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-3A Xpsr170 locus 25.30 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr170 locus 9.20 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr170 locus -63.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, MxG - Hordeum-Laurie3-3H Xpsr170 locus 27.80 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr170 locus 89.00 () Automated name-based, Automated name-based View Maps
Xpsr305 locus -56.70 Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr305 locus 56.40 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr305 locus -24.10 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R Xpsr305 locus 20.50 () Automated name-based, Automated name-based View Maps
Xpsb177 locus 118.40 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-3 Xpsb177 locus 54.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, MxG - Hordeum-Laurie3-3H Xpsb177 locus 80.40 () Automated name-based, Automated name-based View Maps
Xwg110 locus 86.70 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-3A Xwg110 locus 39.10 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R Xwg110 locus 95.70 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xwg110 locus 22.40 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D Xwg110 locus 98.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xwg110 locus 30.60 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-3 Xwg110 locus 34.00 () Automated name-based, Automated name-based View Maps
Xpsr323 locus 8.60 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-3 Xpsr323 locus 37.00 () Automated name-based, Automated name-based View Maps
Xpsb83 locus 56.70 No other positions
XCxp1 locus 95.70 No other positions
eps3L autumn qtl 84.00 - 122.00 No other positions
denso spring qtl 67.40 - 81.00 No other positions
denso autumn qtl 67.40 - 81.00 No other positions
Centromere chromband -56.70 - 56.70 No other positions

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