CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA123-2008, Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPA123-2008-2H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA123-2008, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPA123-2008-2H
Map Start: 0.00
Map Stop: 160.29
Features by Type:
485 locus
485 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 485.       of 20 | Next
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0970 locus 0.00 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0970 locus 0.00 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0970 locus 1.12 () Automated name-based View Maps
POPA3_1446 locus 0.00 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA3_1446 locus 1.12 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA3_1446 locus 0.00 () Automated name-based View Maps
POPA1_1407 locus 0.00 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_1407 locus 0.00 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_1407 locus 1.12 () Automated name-based View Maps
POPA1_0718 locus 2.14 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0718 locus 2.14 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0718 locus 4.41 () Automated name-based View Maps
POPA2_1415 locus 2.86 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA2_1415 locus 5.49 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_1415 locus 2.86 () Automated name-based View Maps
POPA1_1030 locus 3.57 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_1030 locus 3.57 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_1030 locus 6.58 () Automated name-based View Maps
POPA3_1224 locus 4.08 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA3_1224 locus 4.08 () Automated name-based View Maps
POPA1_0326 locus 6.45 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0326 locus 6.45 () Automated name-based View Maps
POPA1_0230 locus 7.14 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0230 locus 12.11 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0230 locus 7.14 () Automated name-based View Maps
POPA1_1059 locus 7.14 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_1059 locus 7.14 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_1059 locus 12.11 () Automated name-based View Maps
POPA1_0592 locus 8.57 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0592 locus 8.57 () Automated name-based View Maps
POPA2_1377 locus 8.57 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_1377 locus 8.57 () Automated name-based View Maps
POPA3_0781 locus 8.57 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA3_0781 locus 8.57 () Automated name-based View Maps
POPA1_0701 locus 8.69 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0701 locus 8.69 () Automated name-based View Maps
POPA2_0563 locus 9.28 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_0563 locus 9.28 () Automated name-based View Maps
POPA2_0774 locus 9.28 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_0774 locus 9.28 () Automated name-based View Maps
POPA2_1532 locus 9.28 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_1532 locus 9.28 () Automated name-based View Maps
POPA2_0261 locus 10.06 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_0261 locus 10.06 () Automated name-based View Maps
POPA2_0430 locus 10.06 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_0430 locus 10.06 () Automated name-based View Maps
POPA3_0402 locus 10.06 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA3_0402 locus 10.06 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA3_0402 locus 15.40 () Automated name-based View Maps
POPA1_0502 locus 10.06 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0502 locus 10.06 () Automated name-based View Maps
POPA1_1119 locus 10.06 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_1119 locus 10.06 () Automated name-based View Maps
POPA3_0155 locus 10.06 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA3_0155 locus 10.06 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA3_0155 locus 15.40 () Automated name-based View Maps
POPA3_0775 locus 10.06 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA3_0775 locus 15.40 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA3_0775 locus 10.06 () Automated name-based View Maps
POPA2_1416 locus 10.06 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_1416 locus 10.06 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.