CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley genes 2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Genes2-2H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley genes 2 [ View Map Set Info ]
Map Name: Hordeum-Genes2-2H
Map Start: -151.00
Map Stop: 85.00
Features by Type:
41 locus
41 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 41.       of 2 | Next
Barley - Barley genes 2 - Hordeum-Genes2-2H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
abo2 locus 18.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H abo2 locus 57.40 () Automated name-based, Automated name-based View Maps
abr locus -4.00 Barley - Barley genes - Hordeum-Genes-2H abr locus -7.50 () Automated name-based, Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H abr locus 76.00 () Automated name-based, Automated name-based View Maps
ant2 locus -59.00 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H ant2 locus 90.80 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H ant2 locus 99.60 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-2H ant2 locus 116.40 () Automated name-based, Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H ant2 locus 96.14 () Automated name-based, Automated name-based View Maps
cer-g locus -40.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H cer-g locus 92.60 () Automated name-based, Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-2H cer-g locus -40.00 () Automated name-based, Automated name-based View Maps
cer-n locus -8.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H cer-n locus 77.70 () Automated name-based, Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-2H cer-n locus -3.00 () Automated name-based, Automated name-based View Maps
com2 locus 21.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H com2 locus 48.90 () Automated name-based, Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-2H com2 locus 21.00 () Automated name-based, Automated name-based View Maps
Eam1 locus 46.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H Eam1 locus 32.80 () Automated name-based, Automated name-based View Maps
eog locus 0.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H eog locus 70.00 () Automated name-based, Automated name-based View Maps
fch1 locus 5.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H fch1 locus 67.70 () Automated name-based, Automated name-based View Maps
fch15 locus 23.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H fch15 locus 43.90 () Automated name-based, Automated name-based View Maps
flo-c locus 29.00 Barley - Barley genes - Hordeum-Genes-2H flo-c locus 25.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H flo-c locus 37.60 () Automated name-based, Automated name-based View Maps
fol-a locus -61.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H fol-a locus 110.60 () Automated name-based, Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-2H fol-a locus -61.00 () Automated name-based, Automated name-based View Maps
gpa locus -103.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H gpa locus 166.00 () Automated name-based, Automated name-based View Maps
gsh1 locus 85.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H gsh1 locus 23.30 () Automated name-based, Automated name-based View Maps
gsh5 locus 3.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H gsh5 locus 72.60 () Automated name-based, Automated name-based View Maps
gsh6 locus 85.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H gsh6 locus 22.00 () Automated name-based, Automated name-based View Maps
gsh8 locus 85.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H gsh8 locus 27.10 () Automated name-based, Automated name-based View Maps
Gth locus -10.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H Gth locus 82.00 () Automated name-based, Automated name-based View Maps
hcm locus -10.00 No other positions
lig locus -81.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H lig locus 144.40 () Automated name-based, Automated name-based View Maps
Lks1 locus -44.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H Lks1 locus 94.00 () Automated name-based, Automated name-based View Maps
msg2 locus 2.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H msg2 locus 74.30 () Automated name-based, Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-2H msg2 locus 2.00 () Automated name-based, Automated name-based View Maps
msg3 locus 6.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H msg3 locus 66.60 () Automated name-based, Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-2H msg3 locus 6.00 () Automated name-based, Automated name-based View Maps
msg9 locus 19.00 Barley - Barley genes - Hordeum-Genes-2H msg9 locus 18.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H msg9 locus 54.60 () Automated name-based, Automated name-based View Maps
msg27 locus -48.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H msg27 locus 98.20 () Automated name-based, Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-2H msg27 locus -53.50 () Automated name-based, Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.