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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Physical-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-6H
Map Start: -65.00
Map Stop: 70.00
Features by Type:
11 chromband
12 rearrangement
23 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 23 of 23.
Barley - Barley, physical - Hordeum-Physical-6H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T67au rearrangement -65.00 - -41.00 No other positions
T63aa rearrangement -41.00 No other positions
T65x rearrangement -41.00 - -19.00 No other positions
T65aa rearrangement -30.00 - -15.00 No other positions
T65aj rearrangement -10.00 - -8.00 No other positions
T65z rearrangement 40.00 - 70.00 No other positions
T65ap rearrangement 34.00 - 70.00 No other positions
T65ao rearrangement 32.00 - 70.00 No other positions
T65ak rearrangement 26.00 - 66.00 No other positions
T64ab rearrangement 25.00 - 62.00 No other positions
T65ab rearrangement 22.00 - 62.00 No other positions
T64z rearrangement 22.00 - 29.00 No other positions
6H(NOR) chromband -42.00 - -40.00 No other positions
6H Centromere chromband -1.00 - 1.00 No other positions
6HS65 chromband -65.00 - -42.00 No other positions
6HS41 chromband -40.00 - -15.00 No other positions
6HS15 chromband -15.00 - -10.00 No other positions
6HS10 chromband -10.00 - -8.00 No other positions
6HS8 chromband -8.00 - -1.00 No other positions
6HS7 chromband 1.00 - 7.00 No other positions
6HL10 chromband 7.00 - 10.00 No other positions
6HL16 chromband 10.00 - 16.00 No other positions
6HL70 chromband 16.00 - 70.00 No other positions

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