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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Physical-5H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-5H
Map Start: -59.00
Map Stop: 90.00
Features by Type:
15 chromband
17 rearrangement
32 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 25 of 32.       of 2 | Next
Barley - Barley, physical - Hordeum-Physical-5H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T75ag rearrangement -59.00 - -43.00 No other positions
T74ae rearrangement -59.00 - -43.00 No other positions
T71an rearrangement -59.00 - -43.00 No other positions
T75ab rearrangement -43.00 No other positions
T75aj rearrangement -43.00 - -22.00 No other positions
T74v rearrangement 9.00 - 18.00 No other positions
T73ao rearrangement 62.00 - 90.00 No other positions
T75an rearrangement 62.00 - 68.00 No other positions
T75ah rearrangement 35.00 - 60.00 No other positions
T76au rearrangement 26.00 - 50.00 No other positions
T75ao rearrangement 25.00 - 58.00 No other positions
T75af rearrangement 25.00 - 58.00 No other positions
T75ap rearrangement 25.00 - 40.00 No other positions
T72ad rearrangement 22.00 - 68.00 No other positions
T75ak rearrangement 22.00 - 60.00 No other positions
T75ac rearrangement 22.00 - 48.00 No other positions
T75ad rearrangement 10.00 - 16.00 No other positions
5H(NOR) chromband -44.00 - -42.00 No other positions
5H Centromere chromband -1.00 - 1.00 No other positions
5HS59 chromband -59.00 - -44.00 No other positions
5HS43 chromband -42.00 - -22.00 No other positions
5HS22 chromband -22.00 - -18.00 No other positions
5HS18 chromband -18.00 - -9.00 No other positions
5HS9 chromband -9.00 - -1.00 No other positions
5HS10 chromband 1.00 - 10.00 No other positions

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