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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, AFLP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Avena-Yu-E
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, AFLP [ View Map Set Info ]
Map Name: Avena-Yu-E
Map Start: 0.00
Map Stop: 733.40
Features by Type:
105 locus
105 Total

Map Features

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Items 1 to 25 of 105.       of 5 | Next
Diploid oat - Diploid Oat, AFLP - Avena-Yu-E
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
E13M12-8b locus 0.00 No other positions
E4M11-9b locus 3.20 No other positions
E9M11-8b locus 2.60 No other positions
E4M11-5a locus 9.50 No other positions
E4M11-7b locus 9.50 No other positions
E4M11-6b locus 9.50 No other positions
Bare-M15-4b locus 16.90 No other positions
E16M9-9b locus 22.50 No other positions
E14M2-2a locus 24.40 No other positions
E1M3-4b locus 36.90 No other positions
Xisu1876 locus 44.00 No other positions
Xcdo520b locus 46.30 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo520b locus 23.00 () Automated name-based, Automated name-based View Maps
E13M11-11a locus 50.60 No other positions
Bare-E5-2a locus 52.40 No other positions
E2M9-8b locus 56.90 No other positions
E16M11-9a locus 64.20 No other positions
RGA-LM850 locus 75.50 No other positions
E7M4-2b locus 78.30 No other positions
E15M4-3a locus 79.20 No other positions
E14M11-2b locus 83.50 No other positions
E10M16-8b locus 112.80 No other positions
E11M14-1a locus 115.80 No other positions
E11M5-6a locus 117.60 No other positions
E1M6-8a locus 124.70 No other positions
E11M15-4b locus 127.70 No other positions

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