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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Maize-Maize, TxCM
(Reference Set)
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Correspondences
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Maps Zea-Ahn-9
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Maize - Maize, TxCM [ View Map Set Info ]
Map Name: Zea-Ahn-9
Map Start: 0.00
Map Stop: 111.45
Features by Type:
16 locus
16 Total

Map Features

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Items 1 to 16 of 16.
Maize - Maize, TxCM - Zea-Ahn-9
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
RZ144a locus 0.00 No other positions
RZ588a locus 13.30 No other positions
RZ2a locus 19.60 Oat - Oat, OxT - Oat-OxT-31 RZ2a locus 174.00 () Automated name-based, Automated name-based View Maps
RZ516 locus 24.20 Rice - Rice, BxOl - Rice-CU-6 RZ516 locus 10.20 () Automated name-based, Automated name-based View Maps
wx locus 27.55 Barley - Barley, IxF - Hordeum-Graner2-7H wx locus 26.10 () Automated name-based, Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-7H wx locus 16.04 () Automated name-based, Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H wx locus -61.60 () Automated name-based, Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-7 wx locus 30.61 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-6 wx locus 0.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H wx locus 15.70 () Automated name-based, Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H wx locus 17.10 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-7H wx locus 30.61 () Automated name-based, Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-7H wx locus 9.80 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R wx locus 91.70 () Automated name-based, Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-7H wx locus 30.61 () Automated name-based, Automated name-based View Maps
CDO17 locus 37.25 Rice - Rice, BxOl - Rice-CU-6 CDO17 locus 54.30 () Automated name-based, Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-7H CDO17 locus 72.82 () Automated name-based, Automated name-based View Maps
CDO78 locus 42.30 Rice - Rice, BxOl - Rice-CU-6 CDO78 locus 87.40 () Automated name-based, Automated name-based View Maps
RZ682 locus 45.65 Rice - Rice, BxOl - Rice-CU-6 RZ682 locus 91.40 () Automated name-based, Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-7H RZ682 locus 176.20 () Automated name-based, Automated name-based View Maps
RZ672b locus 50.20 No other positions
CDO938b locus 61.25 No other positions
CDO260 locus 74.10 Rice - Rice, BxOl - Rice-CU-3 CDO260 locus 39.80 () Automated name-based, Automated name-based View Maps
BNL7.57 locus 89.45 No other positions
CDO1387a locus 91.65 No other positions
RZ742b locus 96.85 Rice - Rice, BxOl - Rice-CU-3 RZ742b locus 32.50 () Automated name-based, Automated name-based View Maps
NPI209A locus 108.70 No other positions
NPI291 locus 111.45 No other positions

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