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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oat-Oat, AxM Doubled Haploid, 2008
(Reference Set)
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Correspondences
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Maps Oat-AxM-DH2008-19
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, AxM Doubled Haploid, 2008 [ View Map Set Info ]
Map Name: Oat-AxM-DH2008-19
Map Start: 0.00
Map Stop: 124.00
Features by Type:
19 locus
19 Total

Map Features

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Items 1 to 19 of 19.
Oat - Oat, AxM Doubled Haploid, 2008 - Oat-AxM-DH2008-19
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
me1em6c locus 124.00 No other positions
AM38 locus 116.00 No other positions
ACC-CGCl locus 111.00 No other positions
ACC-CCGf locus 102.00 No other positions
ATA-CCGh locus 86.00 No other positions
CAC-CCAd locus 71.00 No other positions
me3em5c locus 62.00 No other positions
GC-CCTf locus 55.00 No other positions
A026+ISSR24d locus 55.00 No other positions
GC-CCGb locus 50.00 No other positions
ACG-CGAc locus 43.00 No other positions
GC-CCGa locus 41.00 No other positions
OPAA-12b locus 36.00 No other positions
ACG-CGAh locus 25.00 No other positions
ATA-CAGb locus 13.00 No other positions
D005+ISSR24b locus 13.00 No other positions
ACG-CTTa locus 9.00 No other positions
ACG-CCCd locus 7.00 No other positions
ACG-CTAk locus 0.00 No other positions

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