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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oat-Oat, KxO, 2003
(Reference Set)
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Correspondences
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Maps Oat-KxO/2003-13
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO, 2003 [ View Map Set Info ]
Map Name: Oat-KxO/2003-13
Map Start: 0.00
Map Stop: 66.30
Features by Type:
37 locus
37 Total

Map Features

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Items 1 to 25 of 37.       of 2 | Next
Oat - Oat, KxO, 2003 - Oat-KxO/2003-13
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
BCD1127b locus 11.90 Maize - Maize, TxCM - Zea-Ahn-8 BCD1127b locus 69.25 () Automated name-based, Automated name-based View Maps
cdo460a locus 38.60 Oat - Oat, OxT - Oat-OxT-6 cdo460a locus 28.40 () Automated name-based, Automated name-based View Maps
bcd1876 locus 16.50 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-7 bcd1876 locus 0.00 () Automated name-based, Automated name-based View Maps
og49 locus 12.30 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-9 og49 locus 58.00 () Automated name-based, Automated name-based View Maps
cdo638 locus 22.40 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-16 cdo638 locus 0.00 () Automated name-based, Automated name-based View Maps
CDO1174B locus 11.50 No other positions
BCD1532B locus 31.70 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H BCD1532B locus 29.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H BCD1532B locus 32.90 () Automated name-based, Automated name-based View Maps
aco226c locus 53.90 No other positions
aco238ri locus 11.80 No other positions
bcd1154 locus 11.90 No other positions
bcd1443b locus 60.00 No other positions
bcd1495 locus 12.30 No other positions
bcd876 locus 23.40 No other positions
cdo1327 locus 23.90 No other positions
cdo1358b locus 35.70 No other positions
cdo1435b locus 30.90 No other positions
cdo187a locus 27.00 No other positions
cdo549b locus 29.40 No other positions
cdo585b locus 10.60 No other positions
e1m6_9x locus 32.30 No other positions
e3m7_1d locus 0.00 No other positions
e5m3_5ax locus 12.90 No other positions
e5m5_18x locus 18.70 No other positions
isu2064b locus 51.40 No other positions
re2m2_7x locus 13.20 No other positions

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